RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DNAJC2Q99543 621 aaKnown RBP18.01■□□□□ 0.47
USP28-214ENST00000545540 AP5Z1O43299 807 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 IGKV5-2P06315 115 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 COPS6Q7L5N1 327 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 CCDC39Q9UFE4 941 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 XAGE3Q8WTP9 111 aa18■□□□□ 0.47
USP28-214ENST00000545540 CCDC171Q6TFL3 1326 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 ZKSCAN1P17029 563 aaPredicted RBP17.99■□□□□ 0.47
USP28-214ENST00000545540 CHRNA2Q15822 529 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 HSP90AB4PQ58FF6 505 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 CCDC183Q5T5S1 534 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 USP16Q9Y5T5 823 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 FAM208AQ9UK61 1670 aaKnown RBP17.99■□□□□ 0.47
USP28-214ENST00000545540 RUFY2Q8WXA3 655 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 NAP1L2Q9ULW6 460 aaPredicted RBP17.99■□□□□ 0.47
USP28-214ENST00000545540 AOX1Q06278 1338 aa17.99■□□□□ 0.47
USP28-214ENST00000545540 RRP9O43818 475 aaKnown RBP17.98■□□□□ 0.47
USP28-214ENST00000545540 NECTIN1Q15223 517 aa17.98■□□□□ 0.47
USP28-214ENST00000545540 SLC27A2O14975 620 aa17.98■□□□□ 0.47
USP28-214ENST00000545540 JAK2O60674 1132 aa17.98■□□□□ 0.47
USP28-214ENST00000545540 LIG1P18858 919 aa17.98■□□□□ 0.47
USP28-214ENST00000545540 GPATCH3Q96I76 525 aa17.98■□□□□ 0.47
USP28-214ENST00000545540 A0A087WWV3 80 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 ZNF500O60304 480 aaPredicted RBP17.97■□□□□ 0.47
USP28-214ENST00000545540 TPM2P07951 284 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 UBE2HP62256 183 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 UBE3BQ7Z3V4 1068 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 EVI5LQ96CN4 794 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 DDX46Q7L014 1031 aaKnown RBP17.97■□□□□ 0.47
USP28-214ENST00000545540 TTC6Q86TZ1 520 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 ZSWIM6Q9HCJ5 1215 aa17.97■□□□□ 0.47
USP28-214ENST00000545540 PDIA6Q15084 440 aa17.96■□□□□ 0.47
USP28-214ENST00000545540 LARP1Q6PKG0 1096 aaKnown RBP17.96■□□□□ 0.47
USP28-214ENST00000545540 CSB-PGBD3P0DP91 1061 aa17.96■□□□□ 0.47
USP28-214ENST00000545540 FBXW7Q969H0 707 aa17.96■□□□□ 0.47
USP28-214ENST00000545540 ZNF496Q96IT1 587 aaPredicted RBP17.96■□□□□ 0.47
USP28-214ENST00000545540 TTC41PQ6P2S7 1318 aa17.96■□□□□ 0.47
USP28-214ENST00000545540 PHF14O94880 888 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 ARHGEF25Q86VW2 580 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 A0A0G2JLW4 131 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 TFCP2Q12800 502 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 LINS1Q8NG48 757 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 VPS53Q5VIR6 699 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 CHST3Q7LGC8 479 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 BABAM1Q9NWV8 329 aa17.95■□□□□ 0.46
USP28-214ENST00000545540 BLOC1S2Q6QNY1 142 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 ANKLE2Q86XL3 938 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 ZNF330Q9Y3S2 320 aaPredicted RBP17.94■□□□□ 0.46
USP28-214ENST00000545540 RGPD2P0DJD1 1756 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 LUZP1Q86V48 1076 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 KCNH5Q8NCM2 988 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 CCDC85AQ96PX6 553 aaPredicted RBP17.94■□□□□ 0.46
USP28-214ENST00000545540 KIAA2012Q0VF49 1180 aa17.94■□□□□ 0.46
USP28-214ENST00000545540 KIF13AQ9H1H9 1805 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 HSP90B1P14625 803 aaKnown RBP17.93■□□□□ 0.46
USP28-214ENST00000545540 HS1BP3Q53T59 392 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 ZNF790Q6PG37 636 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 NEUROD6Q96NK8 337 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 MAP4K1Q92918 833 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 DBNDD2Q9BQY9 259 aa17.93■□□□□ 0.46
USP28-214ENST00000545540 FTOQ9C0B1 505 aaKnown RBP eCLIP17.93■□□□□ 0.46
USP28-214ENST00000545540 DBNLQ9UJU6 430 aaKnown RBP17.92■□□□□ 0.46
USP28-214ENST00000545540 FGD1P98174 961 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 KRT28Q7Z3Y7 464 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 DDX21Q9NR30 783 aaKnown RBP eCLIP17.92■□□□□ 0.46
USP28-214ENST00000545540 NEURL1BA8MQ27 555 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 ALDH1L1O75891 902 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 GUCY1B3Q02153 619 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 ERCC4Q92889 916 aaPredicted RBP17.92■□□□□ 0.46
USP28-214ENST00000545540 DACT1Q9NYF0 836 aa17.92■□□□□ 0.46
USP28-214ENST00000545540 AMOTQ4VCS5 1084 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 RAPGEF4Q8WZA2 1011 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 GOLGA6L4A6NEF3 574 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 DDX58O95786 925 aaKnown RBP17.91■□□□□ 0.46
USP28-214ENST00000545540 NEXNQ0ZGT2 675 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 MTX1Q13505 466 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 TOB2Q14106 344 aaPredicted RBP17.91■□□□□ 0.46
USP28-214ENST00000545540 GCKRQ14397 625 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 ZMYND15Q9H091 742 aa17.91■□□□□ 0.46
USP28-214ENST00000545540 TUBGCP6Q96RT7 1819 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 KDM4AO75164 1064 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 TIMM10P62072 90 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 ERC1Q8IUD2 1116 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 HOXB7P09629 217 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 NOLC1Q14978 699 aaKnown RBP eCLIP17.9■□□□□ 0.46
USP28-214ENST00000545540 RAB11FIP4Q86YS3 637 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 PYCARDQ9ULZ3 195 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 ATP6V1DQ9Y5K8 247 aa17.9■□□□□ 0.46
USP28-214ENST00000545540 CCT2P78371 535 aaKnown RBP17.89■□□□□ 0.46
USP28-214ENST00000545540 ANKRD13DQ6ZTN6 518 aa17.89■□□□□ 0.46
USP28-214ENST00000545540 A0A087WZG4 1122 aa17.89■□□□□ 0.45
USP28-214ENST00000545540 COL15A1P39059 1388 aa17.89■□□□□ 0.45
USP28-214ENST00000545540 ZNF594Q96JF6 807 aaPredicted RBP17.89■□□□□ 0.45
USP28-214ENST00000545540 PXDNLA1KZ92 1463 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 LRRC37A3O60309 1634 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 HSP90AB3PQ58FF7 597 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 BRF1Q92994 677 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 IL17RAQ96F46 866 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 SPATA32Q96LK8 384 aa17.88■□□□□ 0.45
USP28-214ENST00000545540 NRBP1Q9UHY1 535 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 160.4 ms