RNA–Protein interactions for RNA: ENST00000545493.1

SCARB1-210, Transcript of scavenger receptor class B member 1, humanhuman

TSL 2

Gene SCARB1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-210ENST00000545493 ALDH1B1P30837 517 aa27.55■■■□□ 2
SCARB1-210ENST00000545493 FKBP4Q02790 459 aaKnown RBP eCLIP27.55■■■□□ 2
SCARB1-210ENST00000545493 FSTL1Q12841 308 aa27.55■■■□□ 2
SCARB1-210ENST00000545493 HDGFL1Q5TGJ6 251 aa27.55■■■□□ 2
SCARB1-210ENST00000545493 ZNF853P0CG23 659 aa27.54■■■□□ 2
SCARB1-210ENST00000545493 ZEB1P37275 1124 aaPredicted RBP27.54■■■□□ 2
SCARB1-210ENST00000545493 APLP1P51693 650 aa27.54■■■□□ 2
SCARB1-210ENST00000545493 AIMP1Q12904 312 aaKnown RBP27.54■■■□□ 2
SCARB1-210ENST00000545493 PPP1R42Q7Z4L9 355 aa27.54■■■□□ 2
SCARB1-210ENST00000545493 SLC51AQ86UW1 340 aa27.54■■■□□ 2
SCARB1-210ENST00000545493 ZNF277Q9NRM2 450 aaPredicted RBP27.53■■■□□ 2
SCARB1-210ENST00000545493 VEGFAP15692 232 aaPredicted RBP27.52■■■□□ 2
SCARB1-210ENST00000545493 HOXA10P31260 410 aaPredicted RBP27.52■■■□□ 2
SCARB1-210ENST00000545493 RPGRQ92834 1020 aaKnown RBP27.52■■■□□ 2
SCARB1-210ENST00000545493 DDX60Q8IY21 1712 aaKnown RBP27.52■■■□□ 2
SCARB1-210ENST00000545493 COL4A5P29400 1685 aa27.52■■■□□ 2
SCARB1-210ENST00000545493 UTP14AQ9BVJ6 771 aaKnown RBP27.51■■□□□ 1.99
SCARB1-210ENST00000545493 IFT57Q9NWB7 429 aa27.51■■□□□ 1.99
SCARB1-210ENST00000545493 RNF123Q5XPI4 1314 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 HSP90AB3PQ58FF7 597 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 DPY19L2Q6NUT2 758 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 NLRP10Q86W26 655 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 RTKN2Q8IZC4 609 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 SMC1BQ8NDV3 1235 aa27.5■■□□□ 1.99
SCARB1-210ENST00000545493 DUSP27Q5VZP5 1158 aa27.49■■□□□ 1.99
SCARB1-210ENST00000545493 ZNF541Q9H0D2 1346 aa27.48■■□□□ 1.99
SCARB1-210ENST00000545493 DDNO94850 711 aaPredicted RBP27.48■■□□□ 1.99
SCARB1-210ENST00000545493 SCN4AP35499 1836 aa27.47■■□□□ 1.99
SCARB1-210ENST00000545493 TCIRG1Q13488 830 aa27.47■■□□□ 1.99
SCARB1-210ENST00000545493 RBM17Q96I25 401 aaKnown RBP27.47■■□□□ 1.99
SCARB1-210ENST00000545493 PPEF1O14829 653 aaPredicted RBP27.46■■□□□ 1.99
SCARB1-210ENST00000545493 IARSP41252 1262 aaKnown RBP27.46■■□□□ 1.99
SCARB1-210ENST00000545493 HTRA3P83110 453 aa27.46■■□□□ 1.99
SCARB1-210ENST00000545493 SLC10A5Q5PT55 438 aa27.46■■□□□ 1.99
SCARB1-210ENST00000545493 CRAMP1Q96RY5 1269 aa27.46■■□□□ 1.99
SCARB1-210ENST00000545493 PSMD1Q99460 953 aa27.46■■□□□ 1.99
SCARB1-210ENST00000545493 DBF4Q9UBU7 674 aaPredicted RBP27.46■■□□□ 1.99
SCARB1-210ENST00000545493 ABCC4O15439 1325 aa27.45■■□□□ 1.99
SCARB1-210ENST00000545493 GNAI1P63096 354 aa27.45■■□□□ 1.98
SCARB1-210ENST00000545493 SYNE4Q8N205 404 aa27.45■■□□□ 1.98
SCARB1-210ENST00000545493 NLRP3Q96P20 1036 aa27.45■■□□□ 1.98
SCARB1-210ENST00000545493 CALD1Q05682 793 aaKnown RBP27.44■■□□□ 1.98
SCARB1-210ENST00000545493 PLBD2Q8NHP8 589 aa27.44■■□□□ 1.98
SCARB1-210ENST00000545493 CC2D2BQ6DHV5 1058 aa27.43■■□□□ 1.98
SCARB1-210ENST00000545493 DNAJC5GQ8N7S2 189 aa27.43■■□□□ 1.98
SCARB1-210ENST00000545493 L3MBTL3Q96JM7 780 aaPredicted RBP27.43■■□□□ 1.98
SCARB1-210ENST00000545493 SH3TC1Q8TE82 1336 aa27.42■■□□□ 1.98
SCARB1-210ENST00000545493 LRRC37AA6NMS7 1700 aa27.42■■□□□ 1.98
SCARB1-210ENST00000545493 HCLS1P14317 486 aaPredicted RBP27.42■■□□□ 1.98
SCARB1-210ENST00000545493 ZNF428Q96B54 188 aa27.42■■□□□ 1.98
SCARB1-210ENST00000545493 PCNTO95613 3336 aa27.41■■□□□ 1.98
SCARB1-210ENST00000545493 TAF1P21675 1872 aa27.41■■□□□ 1.98
SCARB1-210ENST00000545493 ADAMTSL1Q8N6G6 1762 aa27.41■■□□□ 1.98
SCARB1-210ENST00000545493 ISCA1Q9BUE6 129 aa27.41■■□□□ 1.98
SCARB1-210ENST00000545493 HYPKQ9NX55 129 aa27.41■■□□□ 1.98
SCARB1-210ENST00000545493 TRMT112Q9UI30 125 aaKnown RBP27.41■■□□□ 1.98
SCARB1-210ENST00000545493 COL4A1P02462 1669 aa27.4■■□□□ 1.98
SCARB1-210ENST00000545493 ZNF316A6NFI3 1004 aaPredicted RBP27.4■■□□□ 1.98
SCARB1-210ENST00000545493 FZD9O00144 591 aa27.4■■□□□ 1.98
SCARB1-210ENST00000545493 TCERG1O14776 1098 aaKnown RBP27.4■■□□□ 1.98
SCARB1-210ENST00000545493 POTEIP0CG38 1075 aa27.4■■□□□ 1.98
SCARB1-210ENST00000545493 POTEJP0CG39 1038 aa27.4■■□□□ 1.98
SCARB1-210ENST00000545493 ANKRD13DQ6ZTN6 518 aa27.4■■□□□ 1.98
SCARB1-210ENST00000545493 C8orf58Q8NAV2 365 aa27.39■■□□□ 1.98
SCARB1-210ENST00000545493 DUOX1Q9NRD9 1551 aa27.39■■□□□ 1.97
SCARB1-210ENST00000545493 LTBP1Q14766 1721 aa27.38■■□□□ 1.97
SCARB1-210ENST00000545493 ELL2O00472 640 aaPredicted RBP27.38■■□□□ 1.97
SCARB1-210ENST00000545493 ATP5J2-PTCD1G3V325 749 aa27.37■■□□□ 1.97
SCARB1-210ENST00000545493 PHAXQ9H814 394 aaKnown RBP27.37■■□□□ 1.97
SCARB1-210ENST00000545493 ATP6V0A2Q9Y487 856 aa27.37■■□□□ 1.97
SCARB1-210ENST00000545493 IQCA1LA6NCM1 817 aa27.36■■□□□ 1.97
SCARB1-210ENST00000545493 CCDC27Q2M243 656 aa27.36■■□□□ 1.97
SCARB1-210ENST00000545493 GRIPAP1Q4V328 841 aa27.36■■□□□ 1.97
SCARB1-210ENST00000545493 TSR2Q969E8 191 aaKnown RBP27.35■■□□□ 1.97
SCARB1-210ENST00000545493 TAF1DQ9H5J8 278 aaPredicted RBP27.35■■□□□ 1.97
SCARB1-210ENST00000545493 MRS2Q9HD23 443 aa27.35■■□□□ 1.97
SCARB1-210ENST00000545493 TSPYL6Q8N831 410 aa27.34■■□□□ 1.97
SCARB1-210ENST00000545493 KLRG1Q96E93 195 aa27.34■■□□□ 1.97
SCARB1-210ENST00000545493 GOLGA2Q08379 1002 aa27.33■■□□□ 1.97
SCARB1-210ENST00000545493 GRAPQ13588 217 aa27.33■■□□□ 1.97
SCARB1-210ENST00000545493 CHADLQ6NUI6 762 aa27.33■■□□□ 1.97
SCARB1-210ENST00000545493 GRAPLQ8TC17 118 aaPredicted RBP27.33■■□□□ 1.97
SCARB1-210ENST00000545493 JDP2Q8WYK2 163 aa27.33■■□□□ 1.97
SCARB1-210ENST00000545493 FAM89AQ96GI7 184 aa27.33■■□□□ 1.97
SCARB1-210ENST00000545493 ANP32CO43423 234 aa27.32■■□□□ 1.96
SCARB1-210ENST00000545493 WWC1Q8IX03 1113 aa27.32■■□□□ 1.96
SCARB1-210ENST00000545493 LARGE2Q8N3Y3 721 aa27.32■■□□□ 1.96
SCARB1-210ENST00000545493 TRIM28Q13263 835 aaKnown RBP27.31■■□□□ 1.96
SCARB1-210ENST00000545493 DDX46Q7L014 1031 aaKnown RBP27.31■■□□□ 1.96
SCARB1-210ENST00000545493 GPC2Q8N158 579 aa27.31■■□□□ 1.96
SCARB1-210ENST00000545493 RIC3Q7Z5B4 369 aa27.3■■□□□ 1.96
SCARB1-210ENST00000545493 RTFDC1Q9BY42 306 aaPredicted RBP27.3■■□□□ 1.96
SCARB1-210ENST00000545493 HACL1Q9UJ83 578 aa27.3■■□□□ 1.96
SCARB1-210ENST00000545493 PPIP5K2O43314 1243 aa27.29■■□□□ 1.96
SCARB1-210ENST00000545493 BBOX1O75936 387 aa27.29■■□□□ 1.96
SCARB1-210ENST00000545493 AOC3Q16853 763 aa27.29■■□□□ 1.96
SCARB1-210ENST00000545493 LDHDQ86WU2 507 aa27.29■■□□□ 1.96
SCARB1-210ENST00000545493 SP8Q8IXZ3 490 aa27.29■■□□□ 1.96
SCARB1-210ENST00000545493 EIF6P56537 245 aaKnown RBP27.28■■□□□ 1.96
SCARB1-210ENST00000545493 RTL5Q5HYW3 569 aaPredicted RBP27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms