RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 LILRB3O75022 631 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 NR1I2O75469 434 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 RFC5P40937 340 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 COPS2P61201 443 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 MTMR2Q13614 643 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 TRPC5Q9UL62 973 aaPredicted RBP6.83□□□□□ -1.32
CLIP1-217ENST00000543205 COL14A1Q05707 1796 aaKnown RBP6.83□□□□□ -1.32
CLIP1-217ENST00000543205 SLIT2O94813 1529 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 MARF1Q9Y4F3 1742 aaKnown RBP6.83□□□□□ -1.32
CLIP1-217ENST00000543205 CSB-PGBD3P0DP91 1061 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 KCNC4Q03721 635 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 Q3C1V9 767 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 PPP2R2DQ66LE6 453 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 IP6K1Q92551 441 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 COG6Q9Y2V7 657 aa6.83□□□□□ -1.32
CLIP1-217ENST00000543205 CDK12Q9NYV4 1490 aaPredicted RBP6.82□□□□□ -1.32
CLIP1-217ENST00000543205 BCL9LQ86UU0 1499 aa6.82□□□□□ -1.32
CLIP1-217ENST00000543205 HOXC9P31274 260 aa6.82□□□□□ -1.32
CLIP1-217ENST00000543205 VPS72Q15906 364 aa6.82□□□□□ -1.32
CLIP1-217ENST00000543205 RTL5Q5HYW3 569 aaPredicted RBP6.82□□□□□ -1.32
CLIP1-217ENST00000543205 SYMPKQ92797 1274 aaKnown RBP6.82□□□□□ -1.32
CLIP1-217ENST00000543205 ZNF775Q96BV0 537 aaPredicted RBP6.82□□□□□ -1.32
CLIP1-217ENST00000543205 POLKQ9UBT6 870 aa6.82□□□□□ -1.32
CLIP1-217ENST00000543205 EMILIN1Q9Y6C2 1016 aa6.82□□□□□ -1.32
CLIP1-217ENST00000543205 RTL1A6NKG5 1358 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 KCNA1Q09470 495 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 TOM1L2Q6ZVM7 507 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 ANKRD24Q8TF21 1146 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 LTV1Q96GA3 475 aaPredicted RBP6.81□□□□□ -1.32
CLIP1-217ENST00000543205 FLT4P35916 1363 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 KIF24Q5T7B8 1368 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 BRD1O95696 1058 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 RBM6P78332 1123 aaKnown RBP6.81□□□□□ -1.32
CLIP1-217ENST00000543205 LARP1Q6PKG0 1096 aaKnown RBP6.81□□□□□ -1.32
CLIP1-217ENST00000543205 RNF19BQ6ZMZ0 732 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 SCUBE3Q8IX30 993 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 TSC1Q92574 1164 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 GJD4Q96KN9 370 aaPredicted RBP6.81□□□□□ -1.32
CLIP1-217ENST00000543205 PLCH1Q4KWH8 1693 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 CAMTA1Q9Y6Y1 1673 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 ATRNO75882 1429 aa6.81□□□□□ -1.32
CLIP1-217ENST00000543205 BLMP54132 1417 aaPredicted RBP6.81□□□□□ -1.32
CLIP1-217ENST00000543205 ANKRD26Q9UPS8 1709 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 ABCC6O95255 1503 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 SPDYE5A6NIY4 337 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 FMNL1O95466 1100 aaPredicted RBP6.8□□□□□ -1.32
CLIP1-217ENST00000543205 RALBP1Q15311 655 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 HSP90AB2PQ58FF8 381 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 MTRQ99707 1265 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 NLRP2Q9NX02 1062 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 ZNF330Q9Y3S2 320 aaPredicted RBP6.8□□□□□ -1.32
CLIP1-217ENST00000543205 IVNS1ABPQ9Y6Y0 642 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 NWD2Q9ULI1 1742 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 SPATA31A5Q5VU36 1347 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 SPATA31A7Q8IWB4 1347 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 WDR17Q8IZU2 1322 aa6.8□□□□□ -1.32
CLIP1-217ENST00000543205 COL5A2P05997 1499 aaPredicted RBP6.8□□□□□ -1.32
CLIP1-217ENST00000543205 SMG6Q86US8 1419 aaKnown RBP6.79□□□□□ -1.32
CLIP1-217ENST00000543205 MTHFSP49914 203 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 RETREG3Q86VR2 466 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 LTN1O94822 1766 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 LMO7Q8WWI1 1683 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 INSRP06213 1382 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 CRB1P82279 1406 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 AP1G2O75843 785 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 PPP2R1AP30153 589 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 TMEM259Q4ZIN3 620 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 SND1Q7KZF4 910 aaKnown RBP eCLIP6.79□□□□□ -1.32
CLIP1-217ENST00000543205 TCP11L2Q8N4U5 519 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 KIAA1522Q9P206 1035 aaPredicted RBP6.79□□□□□ -1.32
CLIP1-217ENST00000543205 SPATA31A1Q5TZJ5 1347 aa6.79□□□□□ -1.32
CLIP1-217ENST00000543205 COL18A1P39060 1754 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 SMARCA5O60264 1052 aaPredicted RBP6.78□□□□□ -1.32
CLIP1-217ENST00000543205 HELBQ8NG08 1087 aaPredicted RBP6.78□□□□□ -1.32
CLIP1-217ENST00000543205 PRR7Q8TB68 274 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 CFAP53Q96M91 514 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 CARD10Q9BWT7 1032 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 THRAP3Q9Y2W1 955 aaKnown RBP6.78□□□□□ -1.32
CLIP1-217ENST00000543205 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.78□□□□□ -1.32
CLIP1-217ENST00000543205 PARD3Q8TEW0 1356 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 RGS12O14924 1447 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 NRAPQ86VF7 1730 aa6.78□□□□□ -1.32
CLIP1-217ENST00000543205 PATL2C9JE40 543 aaKnown RBP6.77□□□□□ -1.32
CLIP1-217ENST00000543205 CFAP99D6REC4 459 aa6.77□□□□□ -1.32
CLIP1-217ENST00000543205 ANP32CO43423 234 aa6.77□□□□□ -1.32
CLIP1-217ENST00000543205 TLL1O43897 1013 aa6.77□□□□□ -1.32
CLIP1-217ENST00000543205 BRICD5Q6PL45 260 aa6.77□□□□□ -1.32
CLIP1-217ENST00000543205 USB1Q9BQ65 265 aaKnown RBP6.77□□□□□ -1.32
CLIP1-217ENST00000543205 IL21Q9HBE4 155 aa6.77□□□□□ -1.32
CLIP1-217ENST00000543205 SALL2Q9Y467 1007 aaPredicted RBP6.77□□□□□ -1.32
CLIP1-217ENST00000543205 MAP2P11137 1827 aaKnown RBP6.77□□□□□ -1.33
CLIP1-217ENST00000543205 ZPR1O75312 459 aa6.77□□□□□ -1.33
CLIP1-217ENST00000543205 EIF4A2Q14240 407 aaKnown RBP6.77□□□□□ -1.33
CLIP1-217ENST00000543205 NBPF6Q5VWK0 638 aa6.77□□□□□ -1.33
CLIP1-217ENST00000543205 THAP11Q96EK4 314 aa6.77□□□□□ -1.33
CLIP1-217ENST00000543205 NBPF4Q96M43 638 aa6.77□□□□□ -1.33
CLIP1-217ENST00000543205 PRKRIP1Q9H875 184 aaPredicted RBP6.77□□□□□ -1.33
CLIP1-217ENST00000543205 PEAK1Q9H792 1746 aa6.77□□□□□ -1.33
CLIP1-217ENST00000543205 DIAPH1O60610 1272 aaKnown RBP6.76□□□□□ -1.33
CLIP1-217ENST00000543205 TJAP1Q5JTD0 557 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms