RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 DICER1Q9UPY3 1922 aaKnown RBP6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 CA12O43570 354 aa6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 PHKG2P15735 406 aa6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 CRKLP46109 303 aaKnown RBP6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 BEGAINQ9BUH8 593 aa6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 BCL2L12Q9HB09 334 aa6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 SCN4AP35499 1836 aa6.82□□□□□ -1.32
NPIPB3-211ENST00000542953 ERVV-2B6SEH9 535 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 BHMG1C9JSJ3 638 aaPredicted RBP6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 ECE1P42892 770 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 DSG2Q14126 1118 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 IFNL2Q8IZJ0 200 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 CAPNS2Q96L46 248 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 CFAP44Q96MT7 982 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 FER1L6Q2WGJ9 1857 aa6.81□□□□□ -1.32
NPIPB3-211ENST00000542953 GOLGA8CPA6NN73 597 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 RGL2O15211 777 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 MAP2K2P36507 400 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 NFIXQ14938 502 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 CCDC88AQ3V6T2 1871 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 C2CD5Q86YS7 1000 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 CNTROBQ8N137 903 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 L3MBTL2Q969R5 705 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 GPR101Q96P66 508 aaPredicted RBP6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 TAOK3Q9H2K8 898 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 ABT1Q9ULW3 272 aaKnown RBP6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 PDZRN3Q9UPQ7 1066 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 CARMIL3Q8ND23 1372 aa6.8□□□□□ -1.32
NPIPB3-211ENST00000542953 AFDNP55196 1824 aaKnown RBP6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 H0YIN7 160 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 FYB1O15117 783 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 EPHX2P34913 555 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 DGKZQ13574 1117 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 USPL1Q5W0Q7 1092 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 MAP1SQ66K74 1059 aaPredicted RBP6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 INTS5Q6P9B9 1019 aaKnown RBP6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 PNMA8AQ86V59 439 aaPredicted RBP6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 ZNF454Q8N9F8 522 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 OXER1Q8TDS5 423 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 DDX21Q9NR30 783 aaKnown RBP eCLIP6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 HACL1Q9UJ83 578 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 TSKSQ9UJT2 592 aa6.79□□□□□ -1.32
NPIPB3-211ENST00000542953 SOS1Q07889 1333 aaPredicted RBP6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 C21orf2O43822 256 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 ZPR1O75312 459 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 SERPINB2P05120 415 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 HSP90AB1P08238 724 aaKnown RBP6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 PTPREP23469 700 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 BRPF1P55201 1214 aaPredicted RBP6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 EAPPQ56P03 285 aaPredicted RBP6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 CYP4F22Q6NT55 531 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 MRPL50Q8N5N7 158 aaKnown RBP6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 WNT2BQ93097 391 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 GCC1Q96CN9 775 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 TJP1Q07157 1748 aa6.78□□□□□ -1.32
NPIPB3-211ENST00000542953 SOGA3Q5TF21 947 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 HHIPL1Q96JK4 782 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 EYA1Q99502 592 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 ZBED2Q9BTP6 218 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 BRIP1Q9BX63 1249 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 NBPF3Q9H094 633 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 GGNBP2Q9H3C7 697 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 NARFQ9UHQ1 456 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 TLL2Q9Y6L7 1015 aa6.77□□□□□ -1.33
NPIPB3-211ENST00000542953 ZNF541Q9H0D2 1346 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 ANKRD26Q9UPS8 1709 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 A0A0C4DFX4 3053 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 MKI67P46013 3256 aaKnown RBP6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 AOC2O75106 756 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 PTCD1O75127 700 aaKnown RBP6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 PDE6BP35913 854 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 FOSBP53539 338 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 SOX10P56693 466 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 CST9Q5W186 159 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 C7orf43Q8WVR3 580 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 EMILIN1Q9Y6C2 1016 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 COL11A2P13942 1736 aaPredicted RBP6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 WASHC2AQ641Q2 1341 aa6.76□□□□□ -1.33
NPIPB3-211ENST00000542953 COL15A1P39059 1388 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 CABP4P57796 275 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 HABP4Q5JVS0 413 aaKnown RBP6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 STYK1Q6J9G0 422 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 PRPF40BQ6NWY9 871 aaKnown RBP6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 CNKSR1Q969H4 720 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 ZNF622Q969S3 477 aaKnown RBP eCLIP6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 CASP8AP2Q9UKL3 1982 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 ANKRD31Q8N7Z5 1873 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 RNF123Q5XPI4 1314 aa6.75□□□□□ -1.33
NPIPB3-211ENST00000542953 FZD9O00144 591 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 CYP19A1P11511 503 aaPredicted RBP6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 PAXIP1Q6ZW49 1069 aaPredicted RBP6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 SAPCD2Q86UD0 394 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 GPC2Q8N158 579 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 TESK2Q96S53 571 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 SZT2Q5T011 3432 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 CUL9Q8IWT3 2517 aa6.74□□□□□ -1.33
NPIPB3-211ENST00000542953 ARFGEF2Q9Y6D5 1785 aa6.73□□□□□ -1.33
NPIPB3-211ENST00000542953 SRGNP10124 158 aa6.73□□□□□ -1.33
NPIPB3-211ENST00000542953 FKBP4Q02790 459 aaKnown RBP eCLIP6.73□□□□□ -1.33
NPIPB3-211ENST00000542953 FMR1Q06787 632 aaKnown RBP eCLIP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms