RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 AIDAQ96BJ3 306 aa23.72■■□□□ 1.39
CLSTN3-214ENST00000542663 ANKRD36CQ5JPF3 1778 aa23.72■■□□□ 1.39
CLSTN3-214ENST00000542663 MAP3K15Q6ZN16 1313 aa23.71■■□□□ 1.39
CLSTN3-214ENST00000542663 UBN2Q6ZU65 1347 aa23.71■■□□□ 1.39
CLSTN3-214ENST00000542663 ERVV-1B6SEH8 477 aa23.71■■□□□ 1.39
CLSTN3-214ENST00000542663 NGEFQ8N5V2 710 aa23.71■■□□□ 1.39
CLSTN3-214ENST00000542663 NYXQ9GZU5 481 aa23.71■■□□□ 1.39
CLSTN3-214ENST00000542663 IBTKQ9P2D0 1353 aaPredicted RBP23.7■■□□□ 1.38
CLSTN3-214ENST00000542663 LBX1P52954 281 aa23.7■■□□□ 1.38
CLSTN3-214ENST00000542663 DEFB115Q30KQ5 88 aa23.7■■□□□ 1.38
CLSTN3-214ENST00000542663 TTLL7Q6ZT98 887 aa23.7■■□□□ 1.38
CLSTN3-214ENST00000542663 JDP2Q8WYK2 163 aa23.7■■□□□ 1.38
CLSTN3-214ENST00000542663 HOXA10P31260 410 aaPredicted RBP23.69■■□□□ 1.38
CLSTN3-214ENST00000542663 CC2D2BQ6DHV5 1058 aa23.68■■□□□ 1.38
CLSTN3-214ENST00000542663 GJA3Q9Y6H8 435 aa23.68■■□□□ 1.38
CLSTN3-214ENST00000542663 WDR33Q9C0J8 1336 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 TAF1P21675 1872 aa23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 GPTP24298 496 aa23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 SCNN1DP51172 638 aa23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 EIF4A1P60842 406 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 FMR1Q06787 632 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 RPGRQ92834 1020 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 DDX21Q9NR30 783 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 RRP7AQ9Y3A4 280 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-214ENST00000542663 HSPA8P11142 646 aaKnown RBP23.66■■□□□ 1.38
CLSTN3-214ENST00000542663 EIF6P56537 245 aaKnown RBP23.66■■□□□ 1.38
CLSTN3-214ENST00000542663 SUSD4Q5VX71 490 aa23.66■■□□□ 1.38
CLSTN3-214ENST00000542663 EPS15P42566 896 aa23.65■■□□□ 1.38
CLSTN3-214ENST00000542663 KIF6Q6ZMV9 814 aa23.65■■□□□ 1.38
CLSTN3-214ENST00000542663 C3orf67Q6ZVT6 689 aa23.65■■□□□ 1.38
CLSTN3-214ENST00000542663 ZNF34Q8IZ26 560 aa23.65■■□□□ 1.38
CLSTN3-214ENST00000542663 ZBTB3Q9H5J0 574 aa23.65■■□□□ 1.38
CLSTN3-214ENST00000542663 NTSR2O95665 410 aa23.64■■□□□ 1.37
CLSTN3-214ENST00000542663 MYL6BP14649 208 aa23.64■■□□□ 1.37
CLSTN3-214ENST00000542663 PNISRQ8TF01 805 aaKnown RBP23.64■■□□□ 1.37
CLSTN3-214ENST00000542663 CRAMP1Q96RY5 1269 aa23.64■■□□□ 1.37
CLSTN3-214ENST00000542663 ABT1Q9ULW3 272 aaKnown RBP23.64■■□□□ 1.37
CLSTN3-214ENST00000542663 LMOD1P29536 600 aaPredicted RBP23.63■■□□□ 1.37
CLSTN3-214ENST00000542663 GRIPAP1Q4V328 841 aa23.63■■□□□ 1.37
CLSTN3-214ENST00000542663 LARGE2Q8N3Y3 721 aa23.63■■□□□ 1.37
CLSTN3-214ENST00000542663 PLEKHF1Q96S99 279 aa23.63■■□□□ 1.37
CLSTN3-214ENST00000542663 THUMPD2Q9BTF0 503 aaKnown RBP23.63■■□□□ 1.37
CLSTN3-214ENST00000542663 PPEF1O14829 653 aaPredicted RBP23.62■■□□□ 1.37
CLSTN3-214ENST00000542663 RBM17Q96I25 401 aaKnown RBP23.62■■□□□ 1.37
CLSTN3-214ENST00000542663 TCERG1O14776 1098 aaKnown RBP23.61■■□□□ 1.37
CLSTN3-214ENST00000542663 MAP2K1Q02750 393 aaPredicted RBP23.61■■□□□ 1.37
CLSTN3-214ENST00000542663 GIGYF2Q6Y7W6 1299 aaKnown RBP23.61■■□□□ 1.37
CLSTN3-214ENST00000542663 CST9Q5W186 159 aa23.6■■□□□ 1.37
CLSTN3-214ENST00000542663 TRAF5O00463 557 aa23.59■■□□□ 1.37
CLSTN3-214ENST00000542663 USP50Q70EL3 339 aaPredicted RBP23.59■■□□□ 1.37
CLSTN3-214ENST00000542663 LRP10Q7Z4F1 713 aa23.59■■□□□ 1.37
CLSTN3-214ENST00000542663 CAPNS2Q96L46 248 aa23.59■■□□□ 1.37
CLSTN3-214ENST00000542663 NFE2L2Q16236 605 aa23.58■■□□□ 1.37
CLSTN3-214ENST00000542663 NIM1KQ8IY84 436 aa23.58■■□□□ 1.37
CLSTN3-214ENST00000542663 ABHD8Q96I13 439 aa23.58■■□□□ 1.37
CLSTN3-214ENST00000542663 ERBB4Q15303 1308 aa23.58■■□□□ 1.36
CLSTN3-214ENST00000542663 LRRC37AA6NMS7 1700 aa23.57■■□□□ 1.36
CLSTN3-214ENST00000542663 PPIP5K2O43314 1243 aa23.57■■□□□ 1.36
CLSTN3-214ENST00000542663 AOC3Q16853 763 aa23.57■■□□□ 1.36
CLSTN3-214ENST00000542663 CYP4F22Q6NT55 531 aa23.57■■□□□ 1.36
CLSTN3-214ENST00000542663 DDX60Q8IY21 1712 aaKnown RBP23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 NEFMP07197 916 aa23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 PDIA6Q15084 440 aa23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 PPP1R42Q7Z4L9 355 aa23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 GPRC5DQ9NZD1 345 aa23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 ATP6V0A2Q9Y487 856 aa23.56■■□□□ 1.36
CLSTN3-214ENST00000542663 POLR2AP24928 1970 aaKnown RBP23.55■■□□□ 1.36
CLSTN3-214ENST00000542663 CASP8AP2Q9UKL3 1982 aa23.55■■□□□ 1.36
CLSTN3-214ENST00000542663 SLC10A5Q5PT55 438 aa23.55■■□□□ 1.36
CLSTN3-214ENST00000542663 TLL2Q9Y6L7 1015 aa23.55■■□□□ 1.36
CLSTN3-214ENST00000542663 ABCC4O15439 1325 aa23.55■■□□□ 1.36
CLSTN3-214ENST00000542663 DUOX1Q9NRD9 1551 aa23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 CXCL9Q07325 125 aa23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 PARP10Q53GL7 1025 aa23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 PAXIP1Q6ZW49 1069 aaPredicted RBP23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 NLRP3Q96P20 1036 aa23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 GPR101Q96P66 508 aaPredicted RBP23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 VPS33BQ9H267 617 aa23.54■■□□□ 1.36
CLSTN3-214ENST00000542663 ECE1P42892 770 aa23.53■■□□□ 1.36
CLSTN3-214ENST00000542663 RTFDC1Q9BY42 306 aaPredicted RBP23.53■■□□□ 1.36
CLSTN3-214ENST00000542663 ADARB2Q9NS39 739 aaKnown RBP23.53■■□□□ 1.36
CLSTN3-214ENST00000542663 GRM1Q13255 1194 aa23.52■■□□□ 1.36
CLSTN3-214ENST00000542663 PROSER3Q2NL68 480 aa23.52■■□□□ 1.36
CLSTN3-214ENST00000542663 ANXA1P04083 346 aa23.51■■□□□ 1.35
CLSTN3-214ENST00000542663 UTP14AQ9BVJ6 771 aaKnown RBP23.51■■□□□ 1.35
CLSTN3-214ENST00000542663 ZNRF3Q9ULT6 936 aa23.51■■□□□ 1.35
CLSTN3-214ENST00000542663 AOC2O75106 756 aa23.5■■□□□ 1.35
CLSTN3-214ENST00000542663 GMPSP49915 693 aaPredicted RBP23.5■■□□□ 1.35
CLSTN3-214ENST00000542663 TSPYL4Q9UJ04 414 aa23.5■■□□□ 1.35
CLSTN3-214ENST00000542663 EIF2S2P20042 333 aaKnown RBP23.49■■□□□ 1.35
CLSTN3-214ENST00000542663 SAPCD2Q86UD0 394 aa23.49■■□□□ 1.35
CLSTN3-214ENST00000542663 PGAP2Q9UHJ9 254 aa23.49■■□□□ 1.35
CLSTN3-214ENST00000542663 FAM161AQ3B820 660 aa23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 SP8Q8IXZ3 490 aa23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 SUPT20HQ8NEM7 779 aa23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 BEGAINQ9BUH8 593 aa23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 GLIS2Q9BZE0 524 aaPredicted RBP23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 TMX4Q9H1E5 349 aaPredicted RBP23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 TSKSQ9UJT2 592 aa23.48■■□□□ 1.35
CLSTN3-214ENST00000542663 MAPK8IP3Q9UPT6 1336 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms