RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 ANKRD45Q5TZF3 282 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 RPAINQ86UA6 219 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 IL17REQ8NFR9 667 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 GAS2L2Q8NHY3 880 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 RGS12O14924 1447 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 CASQ1P31415 396 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 HMGN5P82970 282 aaKnown RBP13.23□□□□□ -0.29
CDH3-203ENST00000542274 ATL2Q8NHH9 583 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 JRKLQ9Y4A0 524 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 COL18A1P39060 1754 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 SOS2Q07890 1332 aaPredicted RBP13.23□□□□□ -0.29
CDH3-203ENST00000542274 GOLGA6CA6NDK9 693 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 GOLGA6BA6NDN3 693 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 H0YHG0 523 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 KIF3CO14782 793 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 IPO7O95373 1038 aaKnown RBP13.23□□□□□ -0.29
CDH3-203ENST00000542274 GOLGA6DP0CG33 693 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 SARNPP82979 210 aaKnown RBP13.23□□□□□ -0.29
CDH3-203ENST00000542274 GOLGA6AQ9NYA3 693 aa13.23□□□□□ -0.29
CDH3-203ENST00000542274 VIRMAQ69YN4 1812 aaKnown RBP13.23□□□□□ -0.29
CDH3-203ENST00000542274 ERBB3P21860 1342 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 CTAGE5O15320 804 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 NUCB1Q02818 461 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 MAP9Q49MG5 647 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 SWT1Q5T5J6 900 aaKnown RBP13.22□□□□□ -0.29
CDH3-203ENST00000542274 DDX46Q7L014 1031 aaKnown RBP13.22□□□□□ -0.29
CDH3-203ENST00000542274 NLRP2Q9NX02 1062 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 CSB-PGBD3P0DP91 1061 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 SF3A1Q15459 793 aaKnown RBP13.22□□□□□ -0.29
CDH3-203ENST00000542274 CCDC91Q7Z6B0 441 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 CHD1LQ86WJ1 897 aa13.22□□□□□ -0.29
CDH3-203ENST00000542274 GNAT3A8MTJ3 354 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 LIG1P18858 919 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 SLC4A10Q6U841 1118 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 PROCA1Q8NCQ7 364 aaPredicted RBP13.21□□□□□ -0.29
CDH3-203ENST00000542274 MEIS3Q99687 375 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 API5Q9BZZ5 524 aaKnown RBP13.21□□□□□ -0.29
CDH3-203ENST00000542274 NUCKS1Q9H1E3 243 aaKnown RBP13.21□□□□□ -0.29
CDH3-203ENST00000542274 NHSL1Q5SYE7 1610 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 NRDCO43847 1150 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 TPM3P06753 285 aa13.21□□□□□ -0.29
CDH3-203ENST00000542274 DDX49Q9Y6V7 483 aaKnown RBP13.21□□□□□ -0.29
CDH3-203ENST00000542274 MAP3K5Q99683 1374 aa13.21□□□□□ -0.3
CDH3-203ENST00000542274 APBB1O00213 710 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 CAND2O75155 1236 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 MCM5P33992 734 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 INHBEP58166 350 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 GSCP56915 257 aaPredicted RBP13.2□□□□□ -0.3
CDH3-203ENST00000542274 MYBPC2Q14324 1141 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 TSGA10IPQ3SY00 556 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 SPTY2D1Q68D10 685 aaPredicted RBP13.2□□□□□ -0.3
CDH3-203ENST00000542274 ZNF530Q6P9A1 599 aaPredicted RBP13.2□□□□□ -0.3
CDH3-203ENST00000542274 FAM184AQ8NB25 1140 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 LGR6Q9HBX8 967 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 RAD50Q92878 1312 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 ROBO1Q9Y6N7 1651 aa13.2□□□□□ -0.3
CDH3-203ENST00000542274 C10orf67Q8IYJ2 551 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 LTBP4Q8N2S1 1624 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 ABCA3Q99758 1704 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 PRDM11Q9NQV5 511 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 MPRIPQ6WCQ1 1025 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 C16orf71Q8IYS4 520 aaPredicted RBP13.19□□□□□ -0.3
CDH3-203ENST00000542274 SMC3Q9UQE7 1217 aa13.19□□□□□ -0.3
CDH3-203ENST00000542274 ANKRD7Q92527 254 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 LRRC37A3O60309 1634 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 CAMTA1Q9Y6Y1 1673 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 GOLGA6L6A8MZA4 724 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 KCNQ3O43525 872 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 SETDB1Q15047 1291 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 INTS3Q68E01 1043 aaKnown RBP13.18□□□□□ -0.3
CDH3-203ENST00000542274 TBC1D32Q96NH3 1257 aa13.18□□□□□ -0.3
CDH3-203ENST00000542274 ATP2B1P20020 1258 aa13.17□□□□□ -0.3
CDH3-203ENST00000542274 SPRYD3Q8NCJ5 442 aa13.17□□□□□ -0.3
CDH3-203ENST00000542274 OTUD7AQ8TE49 926 aaPredicted RBP13.17□□□□□ -0.3
CDH3-203ENST00000542274 TRIM66O15016 1216 aa13.17□□□□□ -0.3
CDH3-203ENST00000542274 SMARCA5O60264 1052 aaPredicted RBP13.17□□□□□ -0.3
CDH3-203ENST00000542274 ATP6V1AP38606 617 aa13.17□□□□□ -0.3
CDH3-203ENST00000542274 MSL3Q8N5Y2 521 aaKnown RBP13.17□□□□□ -0.3
CDH3-203ENST00000542274 FAM208AQ9UK61 1670 aaKnown RBP13.16□□□□□ -0.3
CDH3-203ENST00000542274 DDX11L8A8MPP1 907 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 PLEKHO1Q53GL0 409 aaPredicted RBP13.16□□□□□ -0.3
CDH3-203ENST00000542274 DEF6Q9H4E7 631 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 IRAK4Q9NWZ3 460 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 NCAPD2Q15021 1401 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 ATP10DQ9P241 1426 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 PAXBP1Q9Y5B6 917 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 LMO7Q8WWI1 1683 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 MEGF6O75095 1541 aa13.16□□□□□ -0.3
CDH3-203ENST00000542274 E2F4Q16254 413 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 PRPF38AQ8NAV1 312 aaKnown RBP13.15□□□□□ -0.3
CDH3-203ENST00000542274 ANAPC4Q9UJX5 808 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 PIP4K2BP78356 416 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 CEP85Q6P2H3 762 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 STRN4Q9NRL3 753 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 CPDO75976 1380 aa13.15□□□□□ -0.3
CDH3-203ENST00000542274 ANXA1P04083 346 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 EIF2S2P20042 333 aaKnown RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 RAPGEF4Q8WZA2 1011 aa13.14□□□□□ -0.31
CDH3-203ENST00000542274 PHAXQ9H814 394 aaKnown RBP13.14□□□□□ -0.31
CDH3-203ENST00000542274 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms