RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 TRMT2AQ8IZ69 625 aaKnown RBP12.54□□□□□ -0.4
YBX3-212ENST00000542002 UTP14AQ9BVJ6 771 aaKnown RBP12.54□□□□□ -0.4
YBX3-212ENST00000542002 NYXQ9GZU5 481 aa12.54□□□□□ -0.4
YBX3-212ENST00000542002 ANKRD31Q8N7Z5 1873 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 PRELPP51888 382 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 HSP90AB3PQ58FF7 597 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 STYK1Q6J9G0 422 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 PPP1R42Q7Z4L9 355 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 RIC3Q7Z5B4 369 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 SLC51AQ86UW1 340 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 C7orf43Q8WVR3 580 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 MASTLQ96GX5 879 aa12.53□□□□□ -0.4
YBX3-212ENST00000542002 ZNF219Q9P2Y4 722 aaPredicted RBP12.53□□□□□ -0.4
YBX3-212ENST00000542002 PI4KAP2A4QPH2 592 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 C21orf2O43822 256 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 HCLS1P14317 486 aaPredicted RBP12.52□□□□□ -0.41
YBX3-212ENST00000542002 NPR1P16066 1061 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 TRIM28Q13263 835 aaKnown RBP12.52□□□□□ -0.41
YBX3-212ENST00000542002 OLFM4Q6UX06 510 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 PI4KAP1Q8N8J0 262 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 FAM89AQ96GI7 184 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 MYD88Q99836 296 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 TRMT112Q9UI30 125 aaKnown RBP12.52□□□□□ -0.41
YBX3-212ENST00000542002 PDZRN3Q9UPQ7 1066 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 MAP3K2Q9Y2U5 619 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 NUP98P52948 1817 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 ADCY9O60503 1353 aa12.52□□□□□ -0.41
YBX3-212ENST00000542002 E9PSI1 815 aa12.51□□□□□ -0.41
YBX3-212ENST00000542002 IGKV5-2P06315 115 aa12.51□□□□□ -0.41
YBX3-212ENST00000542002 RTL5Q5HYW3 569 aaPredicted RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 PRPF40BQ6NWY9 871 aaKnown RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 KSR2Q6VAB6 950 aa12.51□□□□□ -0.41
YBX3-212ENST00000542002 ZNF784Q8NCA9 323 aaPredicted RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 JARID2Q92833 1246 aaPredicted RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 METTL22Q9BUU2 404 aaPredicted RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 STK31Q9BXU1 1019 aa12.51□□□□□ -0.41
YBX3-212ENST00000542002 IBTKQ9P2D0 1353 aaPredicted RBP12.51□□□□□ -0.41
YBX3-212ENST00000542002 HOXA10P31260 410 aaPredicted RBP12.5□□□□□ -0.41
YBX3-212ENST00000542002 RASSF7Q02833 373 aa12.5□□□□□ -0.41
YBX3-212ENST00000542002 FLIIQ13045 1269 aa12.5□□□□□ -0.41
YBX3-212ENST00000542002 CNKSR1Q969H4 720 aa12.5□□□□□ -0.41
YBX3-212ENST00000542002 CHMP4AQ9BY43 222 aa12.5□□□□□ -0.41
YBX3-212ENST00000542002 BRCA1P38398 1863 aaKnown RBP12.5□□□□□ -0.41
YBX3-212ENST00000542002 COL11A2P13942 1736 aaPredicted RBP12.49□□□□□ -0.41
YBX3-212ENST00000542002 NFKBIEO00221 500 aa12.49□□□□□ -0.41
YBX3-212ENST00000542002 NLRP3Q96P20 1036 aa12.49□□□□□ -0.41
YBX3-212ENST00000542002 TNRC6CQ9HCJ0 1690 aaKnown RBP12.48□□□□□ -0.41
YBX3-212ENST00000542002 SH3TC1Q8TE82 1336 aa12.48□□□□□ -0.41
YBX3-212ENST00000542002 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
YBX3-212ENST00000542002 CWF19L2Q2TBE0 894 aaKnown RBP12.48□□□□□ -0.41
YBX3-212ENST00000542002 C9orf131Q5VYM1 1079 aa12.48□□□□□ -0.41
YBX3-212ENST00000542002 F6X3S4 739 aa12.47□□□□□ -0.41
YBX3-212ENST00000542002 ALDH1B1P30837 517 aa12.47□□□□□ -0.41
YBX3-212ENST00000542002 MRPL50Q8N5N7 158 aaKnown RBP12.47□□□□□ -0.41
YBX3-212ENST00000542002 ZBTB38Q8NAP3 1195 aaPredicted RBP12.47□□□□□ -0.41
YBX3-212ENST00000542002 CCDC191Q8NCU4 936 aa12.47□□□□□ -0.41
YBX3-212ENST00000542002 RIC1Q4ADV7 1423 aa12.46□□□□□ -0.41
YBX3-212ENST00000542002 RNF123Q5XPI4 1314 aa12.46□□□□□ -0.41
YBX3-212ENST00000542002 NEURL1BA8MQ27 555 aa12.46□□□□□ -0.41
YBX3-212ENST00000542002 IRS4O14654 1257 aaPredicted RBP12.46□□□□□ -0.41
YBX3-212ENST00000542002 FKBP5Q13451 457 aaPredicted RBP12.46□□□□□ -0.41
YBX3-212ENST00000542002 SSH1Q8WYL5 1049 aa12.46□□□□□ -0.41
YBX3-212ENST00000542002 RPGRQ92834 1020 aaKnown RBP12.46□□□□□ -0.41
YBX3-212ENST00000542002 RBM17Q96I25 401 aaKnown RBP12.46□□□□□ -0.41
YBX3-212ENST00000542002 CRAMP1Q96RY5 1269 aa12.46□□□□□ -0.41
YBX3-212ENST00000542002 CWC25Q9NXE8 425 aaPredicted RBP12.46□□□□□ -0.41
YBX3-212ENST00000542002 SLX4Q8IY92 1834 aa12.46□□□□□ -0.42
YBX3-212ENST00000542002 DLEC1Q9Y238 1755 aa12.46□□□□□ -0.42
YBX3-212ENST00000542002 HNRNPUQ00839 825 aaKnown RBP eCLIP12.45□□□□□ -0.42
YBX3-212ENST00000542002 DNAAF4Q8WXU2 420 aa12.45□□□□□ -0.42
YBX3-212ENST00000542002 ABCC4O15439 1325 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 H7C1W4 665 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 PCCAP05165 728 aaPredicted RBP12.44□□□□□ -0.42
YBX3-212ENST00000542002 SF3B3Q15393 1217 aaKnown RBP12.44□□□□□ -0.42
YBX3-212ENST00000542002 BEND3Q5T5X7 828 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 BCL2L13Q9BXK5 485 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 RNF181Q9P0P0 153 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 ARFGEF1Q9Y6D6 1849 aa12.44□□□□□ -0.42
YBX3-212ENST00000542002 LMNB1P20700 586 aa12.43□□□□□ -0.42
YBX3-212ENST00000542002 CASP7P55210 303 aa12.43□□□□□ -0.42
YBX3-212ENST00000542002 GCKRQ14397 625 aa12.43□□□□□ -0.42
YBX3-212ENST00000542002 ZNF526Q8TF50 670 aaPredicted RBP12.43□□□□□ -0.42
YBX3-212ENST00000542002 CELF1Q92879 486 aaKnown RBP12.43□□□□□ -0.42
YBX3-212ENST00000542002 SNED1Q8TER0 1413 aa12.43□□□□□ -0.42
YBX3-212ENST00000542002 ARFGEF2Q9Y6D5 1785 aa12.43□□□□□ -0.42
YBX3-212ENST00000542002 PPEF1O14829 653 aaPredicted RBP12.42□□□□□ -0.42
YBX3-212ENST00000542002 BBOX1O75936 387 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 NEXNQ0ZGT2 675 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 LINS1Q8NG48 757 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 CCDC85AQ96PX6 553 aaPredicted RBP12.42□□□□□ -0.42
YBX3-212ENST00000542002 TAOK3Q9H2K8 898 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 SEC31BQ9NQW1 1179 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 ATP6V0A2Q9Y487 856 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 ANKRD36CQ5JPF3 1778 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 CHD4Q14839 1912 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 COL4A1P02462 1669 aa12.42□□□□□ -0.42
YBX3-212ENST00000542002 LTBP3Q9NS15 1303 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 PDE8AO60658 829 aa12.41□□□□□ -0.42
YBX3-212ENST00000542002 GRAPQ13588 217 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms