RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 SLX4Q8IY92 1834 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 NFKBIEO00221 500 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 HOXA10P31260 410 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-238ENST00000540663 RASSF7Q02833 373 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 GOLGA2Q08379 1002 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 SLC10A5Q5PT55 438 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 SBF1O95248 1867 aa15.24■□□□□ 0.03
SYNE1-238ENST00000540663 TRIM28Q13263 835 aaKnown RBP15.23■□□□□ 0.03
SYNE1-238ENST00000540663 C7orf43Q8WVR3 580 aa15.23■□□□□ 0.03
SYNE1-238ENST00000540663 RPGRQ92834 1020 aaKnown RBP15.23■□□□□ 0.03
SYNE1-238ENST00000540663 FER1L6Q2WGJ9 1857 aa15.23■□□□□ 0.03
SYNE1-238ENST00000540663 FANCIQ9NVI1 1328 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 SENP3-EIF4A1A0A087X0R7 540 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 DDX58O95786 925 aaKnown RBP15.22■□□□□ 0.03
SYNE1-238ENST00000540663 TWISTNBQ3B726 338 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-238ENST00000540663 CCDC93Q567U6 631 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 TSPYL6Q8N831 410 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 ZNF526Q8TF50 670 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-238ENST00000540663 NLRP3Q96P20 1036 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 ISCA1Q9BUE6 129 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 STK31Q9BXU1 1019 aa15.22■□□□□ 0.03
SYNE1-238ENST00000540663 ZNF219Q9P2Y4 722 aaPredicted RBP15.22■□□□□ 0.03
SYNE1-238ENST00000540663 TRMT112Q9UI30 125 aaKnown RBP15.22■□□□□ 0.03
SYNE1-238ENST00000540663 KDM2BQ8NHM5 1336 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 SH3TC1Q8TE82 1336 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 CACNA1SQ13698 1873 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 C1QTNF8P60827 252 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 CC2D2BQ6DHV5 1058 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 RIC3Q7Z5B4 369 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 RTKN2Q8IZC4 609 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 RBM17Q96I25 401 aaKnown RBP15.21■□□□□ 0.03
SYNE1-238ENST00000540663 CRAMP1Q96RY5 1269 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 TAOK3Q9H2K8 898 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 MYH16Q9H6N6 1097 aa15.21■□□□□ 0.03
SYNE1-238ENST00000540663 SALL2Q9Y467 1007 aaPredicted RBP15.21■□□□□ 0.03
SYNE1-238ENST00000540663 CCER2I3L3R5 266 aa15.2■□□□□ 0.02
SYNE1-238ENST00000540663 GRIPAP1Q4V328 841 aa15.2■□□□□ 0.02
SYNE1-238ENST00000540663 PHAXQ9H814 394 aaKnown RBP15.2■□□□□ 0.02
SYNE1-238ENST00000540663 TIAM2Q8IVF5 1701 aa15.18■□□□□ 0.02
SYNE1-238ENST00000540663 HSP90B1P14625 803 aaKnown RBP15.18■□□□□ 0.02
SYNE1-238ENST00000540663 PRELPP51888 382 aa15.18■□□□□ 0.02
SYNE1-238ENST00000540663 FKBP4Q02790 459 aaKnown RBP eCLIP15.18■□□□□ 0.02
SYNE1-238ENST00000540663 ATP5J2-PTCD1G3V325 749 aa15.17■□□□□ 0.02
SYNE1-238ENST00000540663 HCLS1P14317 486 aaPredicted RBP15.17■□□□□ 0.02
SYNE1-238ENST00000540663 C3orf67Q6ZVT6 689 aa15.17■□□□□ 0.02
SYNE1-238ENST00000540663 CCDC191Q8NCU4 936 aa15.17■□□□□ 0.02
SYNE1-238ENST00000540663 DICER1Q9UPY3 1922 aaKnown RBP15.17■□□□□ 0.02
SYNE1-238ENST00000540663 ZNF521Q96K83 1311 aa15.17■□□□□ 0.02
SYNE1-238ENST00000540663 GLTPD2A6NH11 291 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 KIF3CO14782 793 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 PPEF1O14829 653 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-238ENST00000540663 KSR2Q6VAB6 950 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 PSMD1Q99460 953 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 METTL22Q9BUU2 404 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-238ENST00000540663 TMX4Q9H1E5 349 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-238ENST00000540663 CCDC88AQ3V6T2 1871 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 SNED1Q8TER0 1413 aa15.16■□□□□ 0.02
SYNE1-238ENST00000540663 VAMP4O75379 141 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 BBOX1O75936 387 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 SLC4A2P04920 1241 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 EXOSC9Q06265 439 aaKnown RBP15.15■□□□□ 0.02
SYNE1-238ENST00000540663 DDX46Q7L014 1031 aaKnown RBP15.15■□□□□ 0.02
SYNE1-238ENST00000540663 SYNE4Q8N205 404 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 ZBTB38Q8NAP3 1195 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-238ENST00000540663 FAM89AQ96GI7 184 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 MYD88Q99836 296 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 CWC25Q9NXE8 425 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-238ENST00000540663 LAMB2P55268 1798 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 ABCC4O15439 1325 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 CACNA1FO60840 1977 aa15.15■□□□□ 0.02
SYNE1-238ENST00000540663 NEXNQ0ZGT2 675 aa15.14■□□□□ 0.01
SYNE1-238ENST00000540663 DPY19L2Q6NUT2 758 aa15.14■□□□□ 0.01
SYNE1-238ENST00000540663 TMC4Q7Z404 712 aa15.14■□□□□ 0.01
SYNE1-238ENST00000540663 NMRK2Q9NPI5 230 aa15.14■□□□□ 0.01
SYNE1-238ENST00000540663 SPINK5Q9NQ38 1064 aaPredicted RBP15.14■□□□□ 0.01
SYNE1-238ENST00000540663 MAP3K2Q9Y2U5 619 aa15.14■□□□□ 0.01
SYNE1-238ENST00000540663 DDX60Q8IY21 1712 aaKnown RBP15.14■□□□□ 0.01
SYNE1-238ENST00000540663 PI4KAP2A4QPH2 592 aa15.13■□□□□ 0.01
SYNE1-238ENST00000540663 IRS4O14654 1257 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-238ENST00000540663 PCCAP05165 728 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-238ENST00000540663 FLIIQ13045 1269 aa15.13■□□□□ 0.01
SYNE1-238ENST00000540663 SF3B3Q15393 1217 aaKnown RBP15.13■□□□□ 0.01
SYNE1-238ENST00000540663 OLFM4Q6UX06 510 aa15.13■□□□□ 0.01
SYNE1-238ENST00000540663 PI4KAP1Q8N8J0 262 aa15.13■□□□□ 0.01
SYNE1-238ENST00000540663 ATP6V0A2Q9Y487 856 aa15.13■□□□□ 0.01
SYNE1-238ENST00000540663 TCERG1O14776 1098 aaKnown RBP15.12■□□□□ 0.01
SYNE1-238ENST00000540663 TOMM70O94826 608 aa15.12■□□□□ 0.01
SYNE1-238ENST00000540663 GRAPQ13588 217 aa15.12■□□□□ 0.01
SYNE1-238ENST00000540663 C16orf71Q8IYS4 520 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-238ENST00000540663 GRAPLQ8TC17 118 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-238ENST00000540663 ZNF277Q9NRM2 450 aaPredicted RBP15.12■□□□□ 0.01
SYNE1-238ENST00000540663 E9PSI1 815 aa15.11■□□□□ 0.01
SYNE1-238ENST00000540663 VEGFAP15692 232 aaPredicted RBP15.11■□□□□ 0.01
SYNE1-238ENST00000540663 IARSP41252 1262 aaKnown RBP15.11■□□□□ 0.01
SYNE1-238ENST00000540663 G2E3Q7L622 706 aa15.11■□□□□ 0.01
SYNE1-238ENST00000540663 SP8Q8IXZ3 490 aa15.11■□□□□ 0.01
SYNE1-238ENST00000540663 VPS33BQ9H267 617 aa15.11■□□□□ 0.01
SYNE1-238ENST00000540663 WDR90Q96KV7 1748 aa15.1■□□□□ 0.01
SYNE1-238ENST00000540663 IGKV5-2P06315 115 aa15.1■□□□□ 0.01
SYNE1-238ENST00000540663 FKBP5Q13451 457 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms