RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 LAMB2P55268 1798 aa17.12■□□□□ 0.33
SEMA4D-223ENST00000540475 SCN4AP35499 1836 aa17.12■□□□□ 0.33
SEMA4D-223ENST00000540475 FKBP4Q02790 459 aaKnown RBP eCLIP17.12■□□□□ 0.33
SEMA4D-223ENST00000540475 COPS6Q7L5N1 327 aa17.12■□□□□ 0.33
SEMA4D-223ENST00000540475 PPP1R42Q7Z4L9 355 aa17.12■□□□□ 0.33
SEMA4D-223ENST00000540475 ANXA1P04083 346 aa17.11■□□□□ 0.33
SEMA4D-223ENST00000540475 HSP90AB3PQ58FF7 597 aa17.11■□□□□ 0.33
SEMA4D-223ENST00000540475 CC2D2BQ6DHV5 1058 aa17.11■□□□□ 0.33
SEMA4D-223ENST00000540475 CRAMP1Q96RY5 1269 aa17.11■□□□□ 0.33
SEMA4D-223ENST00000540475 APAF1O14727 1248 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 TCIRG1Q13488 830 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 GRIPAP1Q4V328 841 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 SMC1BQ8NDV3 1235 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 XAGE3Q8WTP9 111 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 PSMD1Q99460 953 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 PCNTO95613 3336 aa17.1■□□□□ 0.33
SEMA4D-223ENST00000540475 OLFM4Q6UX06 510 aa17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 NLRP10Q86W26 655 aa17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 UTP14AQ9BVJ6 771 aaKnown RBP17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 MBIPQ9NS73 344 aa17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 IFT57Q9NWB7 429 aa17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 LAS1LQ9Y4W2 734 aaKnown RBP17.09■□□□□ 0.33
SEMA4D-223ENST00000540475 C3orf67Q6ZVT6 689 aa17.08■□□□□ 0.32
SEMA4D-223ENST00000540475 NLRP3Q96P20 1036 aa17.08■□□□□ 0.32
SEMA4D-223ENST00000540475 CHPF2Q9P2E5 772 aa17.08■□□□□ 0.32
SEMA4D-223ENST00000540475 DBF4Q9UBU7 674 aaPredicted RBP17.08■□□□□ 0.32
SEMA4D-223ENST00000540475 CALD1Q05682 793 aaKnown RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 HDGFL1Q5TGJ6 251 aa17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 SYNE4Q8N205 404 aa17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 NECTIN2Q92692 538 aa17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 RPGRQ92834 1020 aaKnown RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 RBM17Q96I25 401 aaKnown RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 L3MBTL3Q96JM7 780 aaPredicted RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 DDX60Q8IY21 1712 aaKnown RBP17.07■□□□□ 0.32
SEMA4D-223ENST00000540475 FZD9O00144 591 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 DDNO94850 711 aaPredicted RBP17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 IARSP41252 1262 aaKnown RBP17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 GNAI1P63096 354 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 CCDC184Q52MB2 194 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 DUSP27Q5VZP5 1158 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 PLBD2Q8NHP8 589 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 ZNF277Q9NRM2 450 aaPredicted RBP17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 HYPKQ9NX55 129 aa17.06■□□□□ 0.32
SEMA4D-223ENST00000540475 AIMP1Q12904 312 aaKnown RBP17.05■□□□□ 0.32
SEMA4D-223ENST00000540475 ANKRD13DQ6ZTN6 518 aa17.05■□□□□ 0.32
SEMA4D-223ENST00000540475 ISCA1Q9BUE6 129 aa17.05■□□□□ 0.32
SEMA4D-223ENST00000540475 TAF1P21675 1872 aa17.04■□□□□ 0.32
SEMA4D-223ENST00000540475 TRIM28Q13263 835 aaKnown RBP17.04■□□□□ 0.32
SEMA4D-223ENST00000540475 CCDC27Q2M243 656 aa17.04■□□□□ 0.32
SEMA4D-223ENST00000540475 COL4A5P29400 1685 aa17.04■□□□□ 0.32
SEMA4D-223ENST00000540475 VPS33BQ9H267 617 aa17.03■□□□□ 0.32
SEMA4D-223ENST00000540475 ATP6V0A2Q9Y487 856 aa17.03■□□□□ 0.32
SEMA4D-223ENST00000540475 ADAMTSL1Q8N6G6 1762 aa17.02■□□□□ 0.32
SEMA4D-223ENST00000540475 SH3TC1Q8TE82 1336 aa17.02■□□□□ 0.32
SEMA4D-223ENST00000540475 IQCA1LA6NCM1 817 aa17.02■□□□□ 0.32
SEMA4D-223ENST00000540475 PPEF1O14829 653 aaPredicted RBP17.02■□□□□ 0.32
SEMA4D-223ENST00000540475 BBOX1O75936 387 aa17.02■□□□□ 0.32
SEMA4D-223ENST00000540475 ABCC4O15439 1325 aa17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 ZNF541Q9H0D2 1346 aa17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 JMYQ8N9B5 988 aa17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 RTFDC1Q9BY42 306 aaPredicted RBP17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 TRMT112Q9UI30 125 aaKnown RBP17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 LRRC37AA6NMS7 1700 aa17.01■□□□□ 0.31
SEMA4D-223ENST00000540475 ZNF316A6NFI3 1004 aaPredicted RBP17■□□□□ 0.31
SEMA4D-223ENST00000540475 SP8Q8IXZ3 490 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 GPC2Q8N158 579 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 C8orf58Q8NAV2 365 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 KLRG1Q96E93 195 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 CHMP4AQ9BY43 222 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 TAF1DQ9H5J8 278 aaPredicted RBP17■□□□□ 0.31
SEMA4D-223ENST00000540475 CACNA1FO60840 1977 aa17■□□□□ 0.31
SEMA4D-223ENST00000540475 HCLS1P14317 486 aaPredicted RBP16.99■□□□□ 0.31
SEMA4D-223ENST00000540475 SF3B3Q15393 1217 aaKnown RBP16.99■□□□□ 0.31
SEMA4D-223ENST00000540475 CHADLQ6NUI6 762 aa16.99■□□□□ 0.31
SEMA4D-223ENST00000540475 SLC51AQ86UW1 340 aa16.99■□□□□ 0.31
SEMA4D-223ENST00000540475 HTRA3P83110 453 aa16.98■□□□□ 0.31
SEMA4D-223ENST00000540475 WWC1Q8IX03 1113 aa16.98■□□□□ 0.31
SEMA4D-223ENST00000540475 JDP2Q8WYK2 163 aa16.98■□□□□ 0.31
SEMA4D-223ENST00000540475 IL16Q14005 1332 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 LTBP1Q14766 1721 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 POTEIP0CG38 1075 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 POTEJP0CG39 1038 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 GRAPQ13588 217 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 TMC4Q7Z404 712 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 LDHDQ86WU2 507 aa16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 GRAPLQ8TC17 118 aaPredicted RBP16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 PHAXQ9H814 394 aaKnown RBP16.97■□□□□ 0.31
SEMA4D-223ENST00000540475 ATP5J2-PTCD1G3V325 749 aa16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 ELL2O00472 640 aaPredicted RBP16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 CCDC30Q5VVM6 783 aa16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 DDX46Q7L014 1031 aaKnown RBP16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 FAM89AQ96GI7 184 aa16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 HACL1Q9UJ83 578 aa16.96■□□□□ 0.31
SEMA4D-223ENST00000540475 PASKQ96RG2 1323 aa16.96■□□□□ 0.3
SEMA4D-223ENST00000540475 EIF6P56537 245 aaKnown RBP16.95■□□□□ 0.3
SEMA4D-223ENST00000540475 LARGE2Q8N3Y3 721 aa16.95■□□□□ 0.3
SEMA4D-223ENST00000540475 TSPYL6Q8N831 410 aa16.95■□□□□ 0.3
SEMA4D-223ENST00000540475 SUPT20HQ8NEM7 779 aa16.95■□□□□ 0.3
SEMA4D-223ENST00000540475 TMX4Q9H1E5 349 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms