RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	GJB2	P29033	226 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	HPD	P32754	393 aa	Predicted RBP	10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	PSMC4	P43686	418 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	CHMP4BP1	P59074	171 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	TRIM22	Q8IYM9	498 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	CAPZA3	Q96KX2	299 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	ZBTB22	O15209	634 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	GNAI2	P04899	355 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	ACTN2	P35609	894 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	KRT32	Q14532	448 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	MAP7D1	Q3KQU3	841 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	CIB2	O75838	187 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	PPP2R1A	P30153	589 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	MAGEA9	P43362	315 aa		10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	CWC27	Q6UX04	472 aa	Known RBP	10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	FAF1	Q9UNN5	650 aa	Predicted RBP	10.01	□□□□□ -0.81
YBX3-208	ENST00000540447	WDHD1	O75717	1129 aa	Predicted RBP	10	□□□□□ -0.81
YBX3-208	ENST00000540447	COG7	P83436	770 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	CCDC96	Q2M329	555 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	AEBP2	Q6ZN18	517 aa	Predicted RBP	10	□□□□□ -0.81
YBX3-208	ENST00000540447	CNNM3	Q8NE01	707 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	MUM1	Q2TAK8	710 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	TBC1D9	Q6ZT07	1266 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	CDKL5	O76039	1030 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	CETN2	P41208	172 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	SLFN5	Q08AF3	891 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	DDX23	Q9BUQ8	820 aa	Known RBP	10	□□□□□ -0.81
YBX3-208	ENST00000540447	CREB3	O43889	395 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	VPS36	Q86VN1	386 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	HOOK3	Q86VS8	718 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	PUS7	Q96PZ0	661 aa	Known RBP	10	□□□□□ -0.81
YBX3-208	ENST00000540447	TERF2	Q15554	542 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	NEUROD6	Q96NK8	337 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	UACA	Q9BZF9	1416 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	LZTFL1	Q9NQ48	299 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	CEP131	Q9UPN4	1083 aa		10	□□□□□ -0.81
YBX3-208	ENST00000540447	GIGYF1	O75420	1035 aa	Predicted RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	DES	P17661	470 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	AIMP1	Q12904	312 aa	Known RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	PHLDB2	Q86SQ0	1253 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	HOMER2	Q9NSB8	354 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	GOLGA6B	A6NDN3	693 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	IRX1	P78414	480 aa	Predicted RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	9.99	□□□□□ -0.81	6e-8	■□□□□ 9.9
YBX3-208	ENST00000540447	RAD50	Q92878	1312 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	HIP1R	O75146	1068 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	PPFIA2	O75334	1257 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	TUBB2A	Q13885	445 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	IFT81	Q8WYA0	676 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	TUBB2B	Q9BVA1	445 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	9.99	□□□□□ -0.81	5e-6	■■■□□ 16.5
YBX3-208	ENST00000540447	ABCC9	O60706	1549 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	PPFIA1	Q13136	1202 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	PRPF4B	Q13523	1007 aa	Known RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	LARP1	Q6PKG0	1096 aa	Known RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	ARMC2	Q8NEN0	867 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	STAG1	Q8WVM7	1258 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	SMIM23	A6NLE4	172 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447		E7EVH7	732 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	CYLC1	P35663	651 aa	Predicted RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	E2F5	Q15329	346 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	KIAA0753	Q2KHM9	967 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	GPR161	Q8N6U8	529 aa	Known RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	TMX3	Q96JJ7	454 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	UTP14A	Q9BVJ6	771 aa	Known RBP	9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	CXorf56	Q9H5V9	222 aa		9.99	□□□□□ -0.81
YBX3-208	ENST00000540447	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	TSR2	Q969E8	191 aa	Known RBP	9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	TSC22D3	Q99576	134 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	DACT1	Q9NYF0	836 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	GNGT1	P63211	74 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	CCDC170	Q8IYT3	715 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	RASEF	Q8IZ41	740 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	PPFIA3	O75145	1194 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	ALDH3A1	P30838	453 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	POLE2	P56282	527 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	PPP1R7	Q15435	360 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	BMP2KL	Q5H9B9	411 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	GAS2L2	Q8NHY3	880 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	SMARCC2	Q8TAQ2	1214 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	BCAS4	Q8TDM0	211 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	UBAC1	Q9BSL1	405 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	ANAPC4	Q9UJX5	808 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	IGHD	P01880	384 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	RAD51AP2	Q09MP3	1159 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	BRD3	Q15059	726 aa		9.98	□□□□□ -0.81
YBX3-208	ENST00000540447	CCT5	P48643	541 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	ERCC6L	Q2NKX8	1250 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	ARHGEF2	Q92974	986 aa	Known RBP	9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	DDX58	O95786	925 aa	Known RBP	9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	SOGA3	Q5TF21	947 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	NOP2	P46087	812 aa	Known RBP	9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	TMED1	Q13445	227 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	RUFY3	Q7L099	469 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	LARS	Q9P2J5	1176 aa	Known RBP	9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	ZNF215	Q9UL58	517 aa	Predicted RBP	9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	PSMD2	Q13200	908 aa		9.97	□□□□□ -0.81
YBX3-208	ENST00000540447	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	9.97	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms