RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 ST18O60284 1047 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 ADAMTS2O95450 1211 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 BRD1O95696 1058 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 CSB-PGBD3P0DP91 1061 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 ELF2Q15723 593 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 CCDC183Q5T5S1 534 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 GDPD2Q9HCC8 539 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 RAD50Q92878 1312 aa11.26□□□□□ -0.61
CTNNA1-243ENST00000540387 HSPA1LP34931 641 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 USP26Q9BXU7 913 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 ZBTB40Q9NUA8 1239 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 NLRP2Q9NX02 1062 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 JRKLQ9Y4A0 524 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 KDRP35968 1356 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 PHLPP1O60346 1717 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 CRYBG1Q9Y4K1 1723 aa11.25□□□□□ -0.61
CTNNA1-243ENST00000540387 TSGA10IPQ3SY00 556 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 TEX35Q5T0J7 233 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 ANKRD45Q5TZF3 282 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 WDR63Q8IWG1 891 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 CCDC191Q8NCU4 936 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 DRC1Q96MC2 740 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 TRIM35Q9UPQ4 493 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 LRMPQ12912 555 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 NFE2L2Q16236 605 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 USP48Q86UV5 1035 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 ZNF592Q92610 1267 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 STRN4Q9NRL3 753 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 FHOD1Q9Y613 1164 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 PTPRCP08575 1304 aa11.24□□□□□ -0.61
CTNNA1-243ENST00000540387 FOXD4L6Q3SYB3 417 aaPredicted RBP11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 CEP135Q66GS9 1140 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 FOXD4L3Q6VB84 417 aaPredicted RBP11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 BTG4Q9NY30 223 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 LRRFIP2Q9Y608 721 aaKnown RBP11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 MX1P20591 662 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 PLA2G4AP47712 749 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 EVA1CP58658 441 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 ZSCAN26Q16670 478 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 TPD52L1Q16890 204 aaPredicted RBP11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 CCDC27Q2M243 656 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 MTHFSDQ2M296 383 aaKnown RBP11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 ERO1AQ96HE7 468 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 CAMTA1Q9Y6Y1 1673 aa11.23□□□□□ -0.61
CTNNA1-243ENST00000540387 SRLQ86TD4 932 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 EGFL6Q8IUX8 553 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 TMEM57Q8N5G2 664 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 GOLGA6L1Q8N7Z2 621 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 RGPD1P0DJD0 1748 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 COL18A1P39060 1754 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 SART3Q15020 963 aaKnown RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 TOM1L2Q6ZVM7 507 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 CCDC186Q7Z3E2 898 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 JCADQ9P266 1359 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 A0A1B0GUL7 405 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 POLR3GO15318 223 aaPredicted RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 ST5P78524 1137 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 LARP1Q6PKG0 1096 aaKnown RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 ATF7IPQ6VMQ6 1270 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 FUCA2Q9BTY2 467 aa11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 RRP15Q9Y3B9 282 aaKnown RBP11.22□□□□□ -0.61
CTNNA1-243ENST00000540387 TCHHQ07283 1943 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 PNMA6AP0CW24 399 aaPredicted RBP11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 H2AFXP16104 143 aaPredicted RBP11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 ATP2B1P20020 1258 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 DCTN1Q14203 1278 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 GRIPAP1Q4V328 841 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 SMARCE1Q969G3 411 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 DONSONQ9NYP3 566 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 CWC15Q9P013 229 aaKnown RBP11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 WDR17Q8IZU2 1322 aa11.21□□□□□ -0.61
CTNNA1-243ENST00000540387 RGPD5Q99666 1765 aa11.21□□□□□ -0.62
CTNNA1-243ENST00000540387 SATB1Q01826 763 aa11.21□□□□□ -0.62
CTNNA1-243ENST00000540387 TPM4P67936 248 aa11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 TTC31Q49AM3 519 aaPredicted RBP11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 TMED8Q6PL24 325 aaPredicted RBP11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 PACS2Q86VP3 889 aa11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 COL5A2P05997 1499 aaPredicted RBP11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 NPHP1O15259 732 aa11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 HTATSF1O43719 755 aaKnown RBP11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 GSPT1P15170 499 aaKnown RBP11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 ABCA3Q99758 1704 aa11.2□□□□□ -0.62
CTNNA1-243ENST00000540387 COL22A1Q8NFW1 1626 aaPredicted RBP11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 RNF20Q5VTR2 975 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 ZSCAN25Q6NSZ9 544 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 GIMAP6Q6P9H5 292 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 TMX3Q96JJ7 454 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 CXorf56Q9H5V9 222 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 EXOC6BQ9Y2D4 811 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 SLU7O95391 586 aaKnown RBP11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 CLCN6P51797 869 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 MCM10Q7L590 875 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 CEP120Q8N960 986 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 SSH1Q8WYL5 1049 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 RAPGEF4Q8WZA2 1011 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 GCC1Q96CN9 775 aa11.19□□□□□ -0.62
CTNNA1-243ENST00000540387 NRBP1Q9UHY1 535 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms