RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ADCY9O60503 1353 aa12.83□□□□□ -0.36
CLIP1-213ENST00000540338 CYP27B1O15528 508 aa12.83□□□□□ -0.36
CLIP1-213ENST00000540338 AK2P54819 239 aa12.83□□□□□ -0.36
CLIP1-213ENST00000540338 GNL2Q13823 731 aaKnown RBP12.82□□□□□ -0.36
CLIP1-213ENST00000540338 RALYLQ86SE5 291 aaKnown RBP12.82□□□□□ -0.36
CLIP1-213ENST00000540338 PXDNLA1KZ92 1463 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 CCDC171Q6TFL3 1326 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 FAM177BA6PVY3 158 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 GOLIM4O00461 696 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 CCDC173Q0VFZ6 552 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 ERBB4Q15303 1308 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 STX6O43752 255 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 DDX46Q7L014 1031 aaKnown RBP12.82□□□□□ -0.36
CLIP1-213ENST00000540338 PI4K2BQ8TCG2 481 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 WDR17Q8IZU2 1322 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 LETM1O95202 739 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-213ENST00000540338 TNNI3KQ59H18 835 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 DNTTIP2Q5QJE6 756 aaKnown RBP12.82□□□□□ -0.36
CLIP1-213ENST00000540338 BRINP3Q76B58 766 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 RNF214Q8ND24 703 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.82□□□□□ -0.364e-6■■□□□ 12.7
CLIP1-213ENST00000540338 FPGT-TNNI3KV9GXZ4 949 aa12.82□□□□□ -0.36
CLIP1-213ENST00000540338 METTL24Q5JXM2 366 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 TSPY26PQ9H489 355 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 TBC1D2BQ9UPU7 963 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 GPTP24298 496 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 CREB3L3Q68CJ9 461 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 CCDC191Q8NCU4 936 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 CPLX1O14810 134 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 CTNNA3Q9UI47 895 aa12.81□□□□□ -0.36
CLIP1-213ENST00000540338 KRT85P78386 507 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 VPS53Q5VIR6 699 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 BTG4Q9NY30 223 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 TNS3Q68CZ2 1445 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 GJB2P29033 226 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 TOMM22Q9NS69 142 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 TRMT112Q9UI30 125 aaKnown RBP12.8□□□□□ -0.36
CLIP1-213ENST00000540338 SYCE3A1L190 88 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 FAM227BQ96M60 508 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 CARD10Q9BWT7 1032 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 PEAK1Q9H792 1746 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 NUTM2BA6NNL0 878 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-213ENST00000540338 NUTM2EB1AL46 878 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-213ENST00000540338 IGKV5-2P06315 115 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 MCMDC2Q4G0Z9 681 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 CPLX2Q6PUV4 134 aaKnown RBP12.8□□□□□ -0.36
CLIP1-213ENST00000540338 NUTM2AQ8IVF1 878 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-213ENST00000540338 COPRSQ9NQ92 184 aa12.8□□□□□ -0.36
CLIP1-213ENST00000540338 ZSCAN25Q6NSZ9 544 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 BICD2Q8TD16 824 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 HMGB1P09429 215 aaKnown RBP12.79□□□□□ -0.36
CLIP1-213ENST00000540338 ZSCAN22P10073 491 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-213ENST00000540338 KIAA2012Q0VF49 1180 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 SF3A1Q15459 793 aaKnown RBP12.79□□□□□ -0.36
CLIP1-213ENST00000540338 NEK1Q96PY6 1258 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 DBNDD2Q9BQY9 259 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 GDPD2Q9HCC8 539 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 ADAMTS2O95450 1211 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 CPA1P15085 419 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 RUFY3Q7L099 469 aa12.79□□□□□ -0.36
CLIP1-213ENST00000540338 ZSCAN23Q3MJ62 389 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 LDHAL6AQ6ZMR3 332 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 LSG1Q9H089 658 aaKnown RBP12.78□□□□□ -0.36
CLIP1-213ENST00000540338 ANKRD18BA2A2Z9 1011 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 MPHOSPH8Q99549 860 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 PANK2Q9BZ23 570 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 PIK3C2AO00443 1686 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 ATP5JP18859 108 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 FOSBP53539 338 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 TTLL7Q6ZT98 887 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 EYA2O00167 538 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 SASH1O94885 1247 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 DRC7Q8IY82 874 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 NECAB1Q8N987 351 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 RBM27Q9P2N5 1060 aaKnown RBP12.78□□□□□ -0.36
CLIP1-213ENST00000540338 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
CLIP1-213ENST00000540338 FERMT3Q86UX7 667 aa12.77□□□□□ -0.36
CLIP1-213ENST00000540338 TCEANC2Q96MN5 208 aa12.77□□□□□ -0.36
CLIP1-213ENST00000540338 TM6SF1Q9BZW5 370 aa12.77□□□□□ -0.36
CLIP1-213ENST00000540338 PAG1Q9NWQ8 432 aa12.77□□□□□ -0.36
CLIP1-213ENST00000540338 TIMM10P62072 90 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 PTH1RQ03431 593 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 PKP1Q13835 747 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 SNRKQ9NRH2 765 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 TOPAZ1Q8N9V7 1692 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 FMN2Q9NZ56 1722 aa12.77□□□□□ -0.37
CLIP1-213ENST00000540338 SLC27A2O14975 620 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 DHX16O60231 1041 aaKnown RBP12.76□□□□□ -0.37
CLIP1-213ENST00000540338 IMMTQ16891 758 aaKnown RBP12.76□□□□□ -0.37
CLIP1-213ENST00000540338 SYNE3Q6ZMZ3 975 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 LMBRD1Q9NUN5 540 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 XRN1Q8IZH2 1706 aaKnown RBP12.76□□□□□ -0.37
CLIP1-213ENST00000540338 HEG1Q9ULI3 1381 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 BRD1O95696 1058 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 DNAJC10Q8IXB1 793 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 OVOS2A0A0G2JMS6 1433 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 CUL4AQ13619 759 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 RASEFQ8IZ41 740 aa12.76□□□□□ -0.37
CLIP1-213ENST00000540338 TLR7Q9NYK1 1049 aaKnown RBP12.75□□□□□ -0.37
CLIP1-213ENST00000540338 VPS37DQ86XT2 251 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms