RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ADARB2-AS1A8MUL3 147 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 PIK3R2O00459 728 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 ALAS2P22557 587 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 WEE1P30291 646 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 ALYREFQ86V81 257 aaKnown RBP7.7□□□□□ -1.18
VPS13A-213ENST00000539950 FAM200AQ8TCP9 573 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 TNFRSF25Q93038 417 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 TRIM11Q96F44 468 aa7.7□□□□□ -1.18
VPS13A-213ENST00000539950 KLK14Q9P0G3 267 aa7.69□□□□□ -1.18
VPS13A-213ENST00000539950 DMGDHQ9UI17 866 aaKnown RBP7.69□□□□□ -1.18
VPS13A-213ENST00000539950 NOVA2Q9UNW9 492 aaKnown RBP7.69□□□□□ -1.18
VPS13A-213ENST00000539950 STARD13Q9Y3M8 1113 aa7.69□□□□□ -1.18
VPS13A-213ENST00000539950 TGFBR3LH3BV60 316 aa7.68□□□□□ -1.18
VPS13A-213ENST00000539950 HIF1AQ16665 826 aa7.68□□□□□ -1.18
VPS13A-213ENST00000539950 BHMTQ93088 406 aa7.68□□□□□ -1.18
VPS13A-213ENST00000539950 QTRT2Q9H974 415 aaKnown RBP7.68□□□□□ -1.18
VPS13A-213ENST00000539950 ADH7P40394 386 aa7.67□□□□□ -1.18
VPS13A-213ENST00000539950 NEUROD1Q13562 356 aa7.67□□□□□ -1.18
VPS13A-213ENST00000539950 IER5Q5VY09 327 aa7.67□□□□□ -1.18
VPS13A-213ENST00000539950 C8orf86Q6ZUL3 223 aa7.67□□□□□ -1.18
VPS13A-213ENST00000539950 PLVAPQ9BX97 442 aa7.67□□□□□ -1.18
VPS13A-213ENST00000539950 NOP53Q9NZM5 478 aaKnown RBP7.67□□□□□ -1.18
VPS13A-213ENST00000539950 FOXO3O43524 673 aa7.66□□□□□ -1.18
VPS13A-213ENST00000539950 GRNP28799 593 aaKnown RBP7.66□□□□□ -1.18
VPS13A-213ENST00000539950 DGKZQ13574 1117 aa7.66□□□□□ -1.18
VPS13A-213ENST00000539950 ZMIZ1Q9ULJ6 1067 aa7.66□□□□□ -1.18
VPS13A-213ENST00000539950 C1QTNF9BB2RNN3 333 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 M0R082 166 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 ALBP02768 609 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 CHRNA4P43681 627 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 COL9A3Q14050 684 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-213ENST00000539950 CD163Q86VB7 1156 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 ZNF417Q8TAU3 575 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 ZNF587Q96SQ5 575 aaPredicted RBP7.65□□□□□ -1.18
VPS13A-213ENST00000539950 GSX2Q9BZM3 304 aa7.65□□□□□ -1.18
VPS13A-213ENST00000539950 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-213ENST00000539950 INPP5BP32019 993 aa7.64□□□□□ -1.19
VPS13A-213ENST00000539950 IDH3AP50213 366 aa7.64□□□□□ -1.19
VPS13A-213ENST00000539950 SRPK2P78362 688 aaKnown RBP7.64□□□□□ -1.19
VPS13A-213ENST00000539950 MICALL1Q8N3F8 863 aa7.64□□□□□ -1.19
VPS13A-213ENST00000539950 VTI1AQ96AJ9 217 aa7.64□□□□□ -1.19
VPS13A-213ENST00000539950 ZMYND15Q9H091 742 aa7.64□□□□□ -1.19
VPS13A-213ENST00000539950 TBC1D8BQ0IIM8 1120 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 FAM69CQ0P6D2 419 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 FKBP5Q13451 457 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-213ENST00000539950 STK32AQ8WU08 396 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 MYO19Q96H55 970 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 PRIMPOLQ96LW4 560 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 UBE2OQ9C0C9 1292 aaKnown RBP7.63□□□□□ -1.19
VPS13A-213ENST00000539950 IGFLR1Q9H665 355 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 LRFN2Q9ULH4 789 aa7.63□□□□□ -1.19
VPS13A-213ENST00000539950 ACIN1Q9UKV3 1341 aaKnown RBP7.62□□□□□ -1.19
VPS13A-213ENST00000539950 PRMT3O60678 531 aa7.62□□□□□ -1.19
VPS13A-213ENST00000539950 CCINQ13939 588 aa7.62□□□□□ -1.19
VPS13A-213ENST00000539950 ELOAQ14241 798 aaKnown RBP7.62□□□□□ -1.19
VPS13A-213ENST00000539950 C20orf204Q6ZNR8 217 aa7.62□□□□□ -1.19
VPS13A-213ENST00000539950 PRDM6Q9NQX0 595 aa7.62□□□□□ -1.19
VPS13A-213ENST00000539950 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-213ENST00000539950 ADAM23O75077 832 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 NFKB1P19838 968 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 BAG6P46379 1132 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 OCLNQ16625 522 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 SWI5Q1ZZU3 235 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 C11orf91Q3C1V1 193 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 PNMA5Q96PV4 448 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 SLC6A14Q9UN76 642 aa7.61□□□□□ -1.19
VPS13A-213ENST00000539950 FAM229AH3BQW9 127 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 MICAL2O94851 1124 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 SPATA31C1P0DKV0 1188 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 NID1P14543 1247 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 EFCC1Q9HA90 598 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 DNAJB12Q9NXW2 375 aaKnown RBP7.6□□□□□ -1.19
VPS13A-213ENST00000539950 NAGPAQ9UK23 515 aa7.6□□□□□ -1.19
VPS13A-213ENST00000539950 EPB42P16452 691 aa7.59□□□□□ -1.19
VPS13A-213ENST00000539950 ARSDP51689 593 aa7.59□□□□□ -1.19
VPS13A-213ENST00000539950 COX20Q5RI15 118 aa7.59□□□□□ -1.19
VPS13A-213ENST00000539950 ZFATQ9P243 1243 aa7.59□□□□□ -1.19
VPS13A-213ENST00000539950 USP20Q9Y2K6 914 aa7.59□□□□□ -1.19
VPS13A-213ENST00000539950 OPLAHO14841 1288 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 ATG7O95352 703 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 FURINP09958 794 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 KRT25Q7Z3Z0 450 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 NUDT8Q8WV74 236 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 IFT43Q96FT9 208 aa7.58□□□□□ -1.2
VPS13A-213ENST00000539950 SPDYE3A6NKU9 549 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 LILRB5O75023 590 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 TARSP26639 723 aaKnown RBP7.57□□□□□ -1.2
VPS13A-213ENST00000539950 PRRT3Q5FWE3 981 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 TMEM164Q5U3C3 297 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 CAPN12Q6ZSI9 719 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 TREML1Q86YW5 311 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 SAP130Q9H0E3 1048 aa7.57□□□□□ -1.2
VPS13A-213ENST00000539950 JPH1Q9HDC5 661 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-213ENST00000539950 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS13A-213ENST00000539950 ARID3CA6NKF2 412 aa7.56□□□□□ -1.2
VPS13A-213ENST00000539950 SASH3O75995 380 aa7.56□□□□□ -1.2
VPS13A-213ENST00000539950 FAM26DQ5JW98 314 aa7.56□□□□□ -1.2
VPS13A-213ENST00000539950 PSAPL1Q6NUJ1 521 aa7.56□□□□□ -1.2
VPS13A-213ENST00000539950 MKNK1Q9BUB5 465 aa7.56□□□□□ -1.2
VPS13A-213ENST00000539950 RTCBQ9Y3I0 505 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms