RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 BCL2L12Q9HB09 334 aa24.2■■□□□ 1.46
TMEM260-203ENST00000539559 ZSWIM6Q9HCJ5 1215 aa24.2■■□□□ 1.46
TMEM260-203ENST00000539559 LMOD2Q6P5Q4 547 aa24.19■■□□□ 1.46
TMEM260-203ENST00000539559 KIF3AQ9Y496 699 aa24.19■■□□□ 1.46
TMEM260-203ENST00000539559 RBM8AQ9Y5S9 174 aaKnown RBP24.19■■□□□ 1.46
TMEM260-203ENST00000539559 PTGS1P23219 599 aa24.19■■□□□ 1.46
TMEM260-203ENST00000539559 GCP02774 474 aa24.18■■□□□ 1.46
TMEM260-203ENST00000539559 CWF19L2Q2TBE0 894 aaKnown RBP24.18■■□□□ 1.46
TMEM260-203ENST00000539559 ECHDC1Q9NTX5 307 aa24.18■■□□□ 1.46
TMEM260-203ENST00000539559 KIF1AQ12756 1690 aa24.18■■□□□ 1.46
TMEM260-203ENST00000539559 IFIT2P09913 472 aaKnown RBP24.18■■□□□ 1.46
TMEM260-203ENST00000539559 AACSQ86V21 672 aa24.18■■□□□ 1.46
TMEM260-203ENST00000539559 ZHX1Q9UKY1 873 aaPredicted RBP24.18■■□□□ 1.46
TMEM260-203ENST00000539559 STK3Q13188 491 aa24.18■■□□□ 1.46
TMEM260-203ENST00000539559 CCDC8Q9H0W5 538 aaPredicted RBP24.18■■□□□ 1.46
TMEM260-203ENST00000539559 RIOK3O14730 519 aaKnown RBP24.17■■□□□ 1.46
TMEM260-203ENST00000539559 CCDC192P0DO97 292 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 NECTIN1Q15223 517 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 PROSER3Q2NL68 480 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 PPP4R3BQ5MIZ7 849 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 CREB3L3Q68CJ9 461 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 RUFY2Q8WXA3 655 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 CACNA1FO60840 1977 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 ADCY9O60503 1353 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 ATP2B3Q16720 1220 aa24.17■■□□□ 1.46
TMEM260-203ENST00000539559 CCDC171Q6TFL3 1326 aa24.16■■□□□ 1.46
TMEM260-203ENST00000539559 NMIQ13287 307 aaPredicted RBP24.16■■□□□ 1.46
TMEM260-203ENST00000539559 BCL11BQ9C0K0 894 aaPredicted RBP24.16■■□□□ 1.46
TMEM260-203ENST00000539559 C9orf78Q9NZ63 289 aaPredicted RBP24.16■■□□□ 1.46
TMEM260-203ENST00000539559 DCCP43146 1447 aa24.16■■□□□ 1.46
TMEM260-203ENST00000539559 TTC41PQ6P2S7 1318 aa24.16■■□□□ 1.46
TMEM260-203ENST00000539559 PRAMEF22A3QJZ6 481 aa24.16■■□□□ 1.46
TMEM260-203ENST00000539559 MRVI1Q9Y6F6 885 aa24.16■■□□□ 1.46
TMEM260-203ENST00000539559 GTF2F1P35269 517 aaKnown RBP eCLIP24.15■■□□□ 1.46
TMEM260-203ENST00000539559 LRMPQ12912 555 aa24.15■■□□□ 1.46
TMEM260-203ENST00000539559 SMAP1Q8IYB5 467 aaPredicted RBP24.15■■□□□ 1.46
TMEM260-203ENST00000539559 TLR7Q9NYK1 1049 aaKnown RBP24.15■■□□□ 1.46
TMEM260-203ENST00000539559 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.15■■□□□ 1.46
TMEM260-203ENST00000539559 SPDYE4A6NLX3 237 aa24.15■■□□□ 1.46
TMEM260-203ENST00000539559 MPRIPQ6WCQ1 1025 aa24.15■■□□□ 1.46
TMEM260-203ENST00000539559 NRBP1Q9UHY1 535 aa24.15■■□□□ 1.46
TMEM260-203ENST00000539559 MAP3K2Q9Y2U5 619 aa24.15■■□□□ 1.46
TMEM260-203ENST00000539559 TYRO3Q06418 890 aa24.14■■□□□ 1.46
TMEM260-203ENST00000539559 ZSCAN31Q96LW9 406 aaPredicted RBP24.14■■□□□ 1.46
TMEM260-203ENST00000539559 NUP62CLQ9H1M0 184 aa24.14■■□□□ 1.46
TMEM260-203ENST00000539559 SH2B1Q9NRF2 756 aaPredicted RBP24.14■■□□□ 1.46
TMEM260-203ENST00000539559 DACT1Q9NYF0 836 aa24.14■■□□□ 1.46
TMEM260-203ENST00000539559 MST1RQ04912 1400 aa24.14■■□□□ 1.45
TMEM260-203ENST00000539559 ZKSCAN1P17029 563 aaPredicted RBP24.14■■□□□ 1.45
TMEM260-203ENST00000539559 HSP90AB4PQ58FF6 505 aa24.14■■□□□ 1.45
TMEM260-203ENST00000539559 ARHGEF25Q86VW2 580 aa24.14■■□□□ 1.45
TMEM260-203ENST00000539559 SIL1Q9H173 461 aa24.14■■□□□ 1.45
TMEM260-203ENST00000539559 SLIT3O75094 1523 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 NBPF6Q5VWK0 638 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 NBPF4Q96M43 638 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 USP42Q9H9J4 1324 aaKnown RBP24.13■■□□□ 1.45
TMEM260-203ENST00000539559 A0A0D9SFI3 127 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 KRT85P78386 507 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 MAP3K11Q16584 847 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 CADPS2Q86UW7 1296 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 BOLA2Q9H3K6 86 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 STRCP1A6NGW2 1772 aa24.13■■□□□ 1.45
TMEM260-203ENST00000539559 N4BP2Q86UW6 1770 aaPredicted RBP24.13■■□□□ 1.45
TMEM260-203ENST00000539559 PHRF1Q9P1Y6 1649 aaKnown RBP24.13■■□□□ 1.45
TMEM260-203ENST00000539559 ANO6Q4KMQ2 910 aa24.12■■□□□ 1.45
TMEM260-203ENST00000539559 TRPM3Q9HCF6 1732 aaPredicted RBP24.12■■□□□ 1.45
TMEM260-203ENST00000539559 SLC27A2O14975 620 aa24.12■■□□□ 1.45
TMEM260-203ENST00000539559 LARP1Q6PKG0 1096 aaKnown RBP24.12■■□□□ 1.45
TMEM260-203ENST00000539559 KLHDC4Q8TBB5 520 aa24.12■■□□□ 1.45
TMEM260-203ENST00000539559 CCDC186Q7Z3E2 898 aa24.11■■□□□ 1.45
TMEM260-203ENST00000539559 FAM200AQ8TCP9 573 aa24.11■■□□□ 1.45
TMEM260-203ENST00000539559 EAF2Q96CJ1 260 aaPredicted RBP24.11■■□□□ 1.45
TMEM260-203ENST00000539559 EDC3Q96F86 508 aaKnown RBP24.11■■□□□ 1.45
TMEM260-203ENST00000539559 BTBD11A6QL63 1104 aa24.11■■□□□ 1.45
TMEM260-203ENST00000539559 DRC7Q8IY82 874 aa24.11■■□□□ 1.45
TMEM260-203ENST00000539559 TM6SF1Q9BZW5 370 aa24.11■■□□□ 1.45
TMEM260-203ENST00000539559 LRRC59Q96AG4 307 aaKnown RBP24.1■■□□□ 1.45
TMEM260-203ENST00000539559 EVI5LQ96CN4 794 aa24.1■■□□□ 1.45
TMEM260-203ENST00000539559 TNMDQ9H2S6 317 aa24.1■■□□□ 1.45
TMEM260-203ENST00000539559 CBX8Q9HC52 389 aa24.1■■□□□ 1.45
TMEM260-203ENST00000539559 SASH1O94885 1247 aa24.09■■□□□ 1.45
TMEM260-203ENST00000539559 TEFQ10587 303 aa24.09■■□□□ 1.45
TMEM260-203ENST00000539559 BABAM1Q9NWV8 329 aa24.09■■□□□ 1.45
TMEM260-203ENST00000539559 AIMP1Q12904 312 aaKnown RBP24.09■■□□□ 1.45
TMEM260-203ENST00000539559 MAP4K1Q92918 833 aa24.09■■□□□ 1.45
TMEM260-203ENST00000539559 DDX11Q96FC9 970 aa24.09■■□□□ 1.45
TMEM260-203ENST00000539559 CHGBP05060 677 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 KCNB2Q92953 911 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 GPATCH3Q96I76 525 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 C16orf45Q96MC5 204 aaPredicted RBP24.08■■□□□ 1.45
TMEM260-203ENST00000539559 GOLGA6L4A6NEF3 574 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 ZSCAN20P17040 1043 aaPredicted RBP24.08■■□□□ 1.45
TMEM260-203ENST00000539559 ZNF589Q86UQ0 364 aaPredicted RBP24.08■■□□□ 1.45
TMEM260-203ENST00000539559 SUCLG2Q96I99 432 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 SPATA32Q96LK8 384 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 NDUFB9Q9Y6M9 179 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 CEMIPQ8WUJ3 1361 aa24.08■■□□□ 1.45
TMEM260-203ENST00000539559 KDM4FA0A1W2PPD8 638 aa24.07■■□□□ 1.44
TMEM260-203ENST00000539559 JAK2O60674 1132 aa24.07■■□□□ 1.44
TMEM260-203ENST00000539559 FSD1Q9BTV5 496 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms