RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 NUTM1Q86Y26 1132 aa16.57■□□□□ 0.24
CCDC42-202ENST00000539522 PARP3Q9Y6F1 533 aa16.57■□□□□ 0.24
CCDC42-202ENST00000539522 ABCC4O15439 1325 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 RLBP1P12271 317 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 POLD1P28340 1107 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 CASP7P55210 303 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 ERFEQ4G0M1 354 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 HSP90AB3PQ58FF7 597 aa16.56■□□□□ 0.24
CCDC42-202ENST00000539522 JARID2Q92833 1246 aaPredicted RBP16.56■□□□□ 0.24
CCDC42-202ENST00000539522 NLGN2Q8NFZ4 835 aa16.55■□□□□ 0.24
CCDC42-202ENST00000539522 ARHGAP45Q92619 1136 aa16.55■□□□□ 0.24
CCDC42-202ENST00000539522 FHDC1Q9C0D6 1143 aaPredicted RBP16.55■□□□□ 0.24
CCDC42-202ENST00000539522 TAF1P21675 1872 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 RIC1Q4ADV7 1423 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 KIF16BQ96L93 1317 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 PLIN1O60240 522 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 KCNA3P22001 575 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 PARP10Q53GL7 1025 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 NBPF5PQ86XG9 351 aaPredicted RBP16.54■□□□□ 0.24
CCDC42-202ENST00000539522 LINS1Q8NG48 757 aa16.54■□□□□ 0.24
CCDC42-202ENST00000539522 GCKRQ14397 625 aa16.53■□□□□ 0.24
CCDC42-202ENST00000539522 ATF7IPQ6VMQ6 1270 aa16.53■□□□□ 0.24
CCDC42-202ENST00000539522 CNBD1Q8NA66 436 aa16.53■□□□□ 0.24
CCDC42-202ENST00000539522 CCDC191Q8NCU4 936 aa16.53■□□□□ 0.24
CCDC42-202ENST00000539522 FRAT1Q92837 279 aaPredicted RBP16.53■□□□□ 0.24
CCDC42-202ENST00000539522 FAM89AQ96GI7 184 aa16.53■□□□□ 0.24
CCDC42-202ENST00000539522 UTRNP46939 3433 aa16.52■□□□□ 0.24
CCDC42-202ENST00000539522 KLRG2A4D1S0 409 aaPredicted RBP16.52■□□□□ 0.24
CCDC42-202ENST00000539522 H7C1W4 665 aa16.52■□□□□ 0.24
CCDC42-202ENST00000539522 RTL5Q5HYW3 569 aaPredicted RBP16.52■□□□□ 0.24
CCDC42-202ENST00000539522 SLC10A5Q5PT55 438 aa16.52■□□□□ 0.24
CCDC42-202ENST00000539522 C20orf194Q5TEA3 1177 aa16.52■□□□□ 0.24
CCDC42-202ENST00000539522 SLC4A10Q6U841 1118 aa16.52■□□□□ 0.24
CCDC42-202ENST00000539522 UTP14AQ9BVJ6 771 aaKnown RBP16.52■□□□□ 0.24
CCDC42-202ENST00000539522 CWC25Q9NXE8 425 aaPredicted RBP16.52■□□□□ 0.24
CCDC42-202ENST00000539522 MYH3P11055 1940 aa16.52■□□□□ 0.23
CCDC42-202ENST00000539522 CACNA1SQ13698 1873 aa16.52■□□□□ 0.23
CCDC42-202ENST00000539522 ZKSCAN2Q63HK3 967 aa16.51■□□□□ 0.23
CCDC42-202ENST00000539522 ZBTB38Q8NAP3 1195 aaPredicted RBP16.51■□□□□ 0.23
CCDC42-202ENST00000539522 CLUAP1Q96AJ1 413 aa16.51■□□□□ 0.23
CCDC42-202ENST00000539522 KAZALD1Q96I82 304 aa16.51■□□□□ 0.23
CCDC42-202ENST00000539522 SYT17Q9BSW7 474 aa16.51■□□□□ 0.23
CCDC42-202ENST00000539522 API5Q9BZZ5 524 aaKnown RBP16.51■□□□□ 0.23
CCDC42-202ENST00000539522 TRMT112Q9UI30 125 aaKnown RBP16.51■□□□□ 0.23
CCDC42-202ENST00000539522 CD2APQ9Y5K6 639 aa16.51■□□□□ 0.23
CCDC42-202ENST00000539522 PCCAP05165 728 aaPredicted RBP16.5■□□□□ 0.23
CCDC42-202ENST00000539522 HCLS1P14317 486 aaPredicted RBP16.5■□□□□ 0.23
CCDC42-202ENST00000539522 CHRNA5P30532 468 aa16.5■□□□□ 0.23
CCDC42-202ENST00000539522 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
CCDC42-202ENST00000539522 TPTE2Q6XPS3 522 aa16.5■□□□□ 0.23
CCDC42-202ENST00000539522 PPP1R42Q7Z4L9 355 aa16.5■□□□□ 0.23
CCDC42-202ENST00000539522 SLC51AQ86UW1 340 aa16.5■□□□□ 0.23
CCDC42-202ENST00000539522 BRIP1Q9BX63 1249 aa16.5■□□□□ 0.23
CCDC42-202ENST00000539522 UTYO14607 1347 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 RNF123Q5XPI4 1314 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 SH3TC1Q8TE82 1336 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 ALDH1L1O75891 902 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 NBPF7P0C2Y1 421 aaPredicted RBP16.49■□□□□ 0.23
CCDC42-202ENST00000539522 NEXNQ0ZGT2 675 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 TMEM57Q8N5G2 664 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 SRCIN1Q9C0H9 1055 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 NYXQ9GZU5 481 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 USP44Q9H0E7 712 aa16.49■□□□□ 0.23
CCDC42-202ENST00000539522 CDHR2Q9BYE9 1310 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 SLX4Q8IY92 1834 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 A0A0G2JLW4 131 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 DPEP1P16444 411 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 CRY2Q49AN0 593 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 EPHA10Q5JZY3 1008 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 PANK1Q8TE04 598 aa16.48■□□□□ 0.23
CCDC42-202ENST00000539522 UBE3BQ7Z3V4 1068 aa16.47■□□□□ 0.23
CCDC42-202ENST00000539522 PPP1R1BQ9UD71 204 aaPredicted RBP16.47■□□□□ 0.23
CCDC42-202ENST00000539522 GRM8O00222 908 aa16.46■□□□□ 0.23
CCDC42-202ENST00000539522 IRS4O14654 1257 aaPredicted RBP16.46■□□□□ 0.23
CCDC42-202ENST00000539522 IPO8O15397 1037 aaKnown RBP16.46■□□□□ 0.23
CCDC42-202ENST00000539522 SRGNP10124 158 aa16.46■□□□□ 0.23
CCDC42-202ENST00000539522 ST5P78524 1137 aa16.46■□□□□ 0.23
CCDC42-202ENST00000539522 FOXO4P98177 505 aa16.46■□□□□ 0.23
CCDC42-202ENST00000539522 KLHL34Q8N239 644 aa16.46■□□□□ 0.23
CCDC42-202ENST00000539522 ARFGEF1Q9Y6D6 1849 aa16.45■□□□□ 0.22
CCDC42-202ENST00000539522 CCT4P50991 539 aaKnown RBP16.45■□□□□ 0.22
CCDC42-202ENST00000539522 RRP1P56182 461 aaKnown RBP16.45■□□□□ 0.22
CCDC42-202ENST00000539522 TGFB2P61812 414 aa16.45■□□□□ 0.22
CCDC42-202ENST00000539522 DZIP1LQ8IYY4 767 aaKnown RBP16.45■□□□□ 0.22
CCDC42-202ENST00000539522 SUCLG2Q96I99 432 aa16.45■□□□□ 0.22
CCDC42-202ENST00000539522 MEIS3Q99687 375 aa16.45■□□□□ 0.22
CCDC42-202ENST00000539522 SPEF2Q9C093 1822 aa16.45■□□□□ 0.22
CCDC42-202ENST00000539522 C2CD5Q86YS7 1000 aa16.44■□□□□ 0.22
CCDC42-202ENST00000539522 PLA2G12BQ9BX93 195 aa16.44■□□□□ 0.22
CCDC42-202ENST00000539522 WWC3Q9ULE0 1092 aa16.44■□□□□ 0.22
CCDC42-202ENST00000539522 SUPT16HQ9Y5B9 1047 aaKnown RBP16.44■□□□□ 0.22
CCDC42-202ENST00000539522 SF3B3Q15393 1217 aaKnown RBP16.43■□□□□ 0.22
CCDC42-202ENST00000539522 ANKRD44Q8N8A2 993 aa16.43■□□□□ 0.22
CCDC42-202ENST00000539522 SNED1Q8TER0 1413 aa16.43■□□□□ 0.22
CCDC42-202ENST00000539522 LRRC37AA6NMS7 1700 aa16.42■□□□□ 0.22
CCDC42-202ENST00000539522 A0A1B0GUL6 1792 aa16.42■□□□□ 0.22
CCDC42-202ENST00000539522 ZBTB7BO15156 539 aaPredicted RBP16.42■□□□□ 0.22
CCDC42-202ENST00000539522 CSF1RP07333 972 aa16.42■□□□□ 0.22
CCDC42-202ENST00000539522 GTF2E1P29083 439 aaPredicted RBP16.42■□□□□ 0.22
CCDC42-202ENST00000539522 HOXA10P31260 410 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms