RNA–Protein interactions for RNA: ENST00000538725.1

MSRB3-208, Transcript of methionine sulfoxide reductase B3, humanhuman

TSL 4

Gene MSRB3, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-208ENST00000538725 DDX21Q9NR30 783 aaKnown RBP eCLIP26.44■■□□□ 1.82
MSRB3-208ENST00000538725 HOXA10P31260 410 aaPredicted RBP26.43■■□□□ 1.82
MSRB3-208ENST00000538725 OLFM4Q6UX06 510 aa26.43■■□□□ 1.82
MSRB3-208ENST00000538725 CFAP44Q96MT7 982 aa26.43■■□□□ 1.82
MSRB3-208ENST00000538725 RIC1Q4ADV7 1423 aa26.42■■□□□ 1.82
MSRB3-208ENST00000538725 AIMP1Q12904 312 aaKnown RBP26.42■■□□□ 1.82
MSRB3-208ENST00000538725 DNAJC5GQ8N7S2 189 aa26.42■■□□□ 1.82
MSRB3-208ENST00000538725 RPGRQ92834 1020 aaKnown RBP26.42■■□□□ 1.82
MSRB3-208ENST00000538725 WDR90Q96KV7 1748 aa26.42■■□□□ 1.82
MSRB3-208ENST00000538725 XAGE3Q8WTP9 111 aa26.41■■□□□ 1.82
MSRB3-208ENST00000538725 UTP14AQ9BVJ6 771 aaKnown RBP26.41■■□□□ 1.82
MSRB3-208ENST00000538725 DDNO94850 711 aaPredicted RBP26.4■■□□□ 1.82
MSRB3-208ENST00000538725 HOXB7P09629 217 aa26.4■■□□□ 1.82
MSRB3-208ENST00000538725 HSP90AB3PQ58FF7 597 aa26.4■■□□□ 1.82
MSRB3-208ENST00000538725 RBM17Q96I25 401 aaKnown RBP26.4■■□□□ 1.82
MSRB3-208ENST00000538725 ZNF277Q9NRM2 450 aaPredicted RBP26.4■■□□□ 1.82
MSRB3-208ENST00000538725 APAF1O14727 1248 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 SLC10A5Q5PT55 438 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 CC2D2BQ6DHV5 1058 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 SYNE4Q8N205 404 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 NLRP3Q96P20 1036 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 CRAMP1Q96RY5 1269 aa26.39■■□□□ 1.82
MSRB3-208ENST00000538725 ZEB1P37275 1124 aaPredicted RBP26.38■■□□□ 1.81
MSRB3-208ENST00000538725 CHPF2Q9P2E5 772 aa26.38■■□□□ 1.81
MSRB3-208ENST00000538725 TCIRG1Q13488 830 aa26.37■■□□□ 1.81
MSRB3-208ENST00000538725 HDGFL1Q5TGJ6 251 aa26.37■■□□□ 1.81
MSRB3-208ENST00000538725 ZNF853P0CG23 659 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 GRIPAP1Q4V328 841 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 NLRP10Q86W26 655 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 PSMD1Q99460 953 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 MBIPQ9NS73 344 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 RNF123Q5XPI4 1314 aa26.36■■□□□ 1.81
MSRB3-208ENST00000538725 IARSP41252 1262 aaKnown RBP26.35■■□□□ 1.81
MSRB3-208ENST00000538725 DUSP27Q5VZP5 1158 aa26.35■■□□□ 1.81
MSRB3-208ENST00000538725 C3orf67Q6ZVT6 689 aa26.35■■□□□ 1.81
MSRB3-208ENST00000538725 DBF4Q9UBU7 674 aaPredicted RBP26.35■■□□□ 1.81
MSRB3-208ENST00000538725 HTRA3P83110 453 aa26.34■■□□□ 1.81
MSRB3-208ENST00000538725 CALD1Q05682 793 aaKnown RBP26.34■■□□□ 1.81
MSRB3-208ENST00000538725 ANKRD13DQ6ZTN6 518 aa26.33■■□□□ 1.81
MSRB3-208ENST00000538725 IFT57Q9NWB7 429 aa26.33■■□□□ 1.81
MSRB3-208ENST00000538725 ANKRD36CQ5JPF3 1778 aa26.33■■□□□ 1.8
MSRB3-208ENST00000538725 SNED1Q8TER0 1413 aa26.32■■□□□ 1.8
MSRB3-208ENST00000538725 GNAI1P63096 354 aa26.32■■□□□ 1.8
MSRB3-208ENST00000538725 PLBD2Q8NHP8 589 aa26.32■■□□□ 1.8
MSRB3-208ENST00000538725 L3MBTL3Q96JM7 780 aaPredicted RBP26.32■■□□□ 1.8
MSRB3-208ENST00000538725 HYPKQ9NX55 129 aa26.32■■□□□ 1.8
MSRB3-208ENST00000538725 TRMT112Q9UI30 125 aaKnown RBP26.32■■□□□ 1.8
MSRB3-208ENST00000538725 IQCA1LA6NCM1 817 aa26.31■■□□□ 1.8
MSRB3-208ENST00000538725 PPEF1O14829 653 aaPredicted RBP26.31■■□□□ 1.8
MSRB3-208ENST00000538725 FZD9O00144 591 aa26.3■■□□□ 1.8
MSRB3-208ENST00000538725 TCERG1O14776 1098 aaKnown RBP26.3■■□□□ 1.8
MSRB3-208ENST00000538725 JDP2Q8WYK2 163 aa26.3■■□□□ 1.8
MSRB3-208ENST00000538725 HCLS1P14317 486 aaPredicted RBP26.29■■□□□ 1.8
MSRB3-208ENST00000538725 KLRG1Q96E93 195 aa26.29■■□□□ 1.8
MSRB3-208ENST00000538725 TMX4Q9H1E5 349 aaPredicted RBP26.29■■□□□ 1.8
MSRB3-208ENST00000538725 CCDC184Q52MB2 194 aa26.28■■□□□ 1.8
MSRB3-208ENST00000538725 SH3TC1Q8TE82 1336 aa26.28■■□□□ 1.8
MSRB3-208ENST00000538725 ZNF541Q9H0D2 1346 aa26.28■■□□□ 1.8
MSRB3-208ENST00000538725 SCN4AP35499 1836 aa26.28■■□□□ 1.8
MSRB3-208ENST00000538725 BBOX1O75936 387 aa26.27■■□□□ 1.8
MSRB3-208ENST00000538725 CHADLQ6NUI6 762 aa26.27■■□□□ 1.8
MSRB3-208ENST00000538725 ATP6V0A2Q9Y487 856 aa26.27■■□□□ 1.8
MSRB3-208ENST00000538725 ISCA1Q9BUE6 129 aa26.26■■□□□ 1.79
MSRB3-208ENST00000538725 TAF1DQ9H5J8 278 aaPredicted RBP26.26■■□□□ 1.79
MSRB3-208ENST00000538725 ABCC4O15439 1325 aa26.25■■□□□ 1.79
MSRB3-208ENST00000538725 ELL2O00472 640 aaPredicted RBP26.25■■□□□ 1.79
MSRB3-208ENST00000538725 POTEIP0CG38 1075 aa26.25■■□□□ 1.79
MSRB3-208ENST00000538725 POTEJP0CG39 1038 aa26.25■■□□□ 1.79
MSRB3-208ENST00000538725 DDX46Q7L014 1031 aaKnown RBP26.24■■□□□ 1.79
MSRB3-208ENST00000538725 GPC2Q8N158 579 aa26.24■■□□□ 1.79
MSRB3-208ENST00000538725 LARGE2Q8N3Y3 721 aa26.24■■□□□ 1.79
MSRB3-208ENST00000538725 HACL1Q9UJ83 578 aa26.24■■□□□ 1.79
MSRB3-208ENST00000538725 LAMB2P55268 1798 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 ATP5J2-PTCD1G3V325 749 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 EIF6P56537 245 aaKnown RBP26.23■■□□□ 1.79
MSRB3-208ENST00000538725 TRIM28Q13263 835 aaKnown RBP26.23■■□□□ 1.79
MSRB3-208ENST00000538725 SLC51AQ86UW1 340 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 LDHDQ86WU2 507 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 SP8Q8IXZ3 490 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 VPS33BQ9H267 617 aa26.23■■□□□ 1.79
MSRB3-208ENST00000538725 JMYQ8N9B5 988 aa26.22■■□□□ 1.79
MSRB3-208ENST00000538725 C8orf58Q8NAV2 365 aa26.22■■□□□ 1.79
MSRB3-208ENST00000538725 ZNF428Q96B54 188 aa26.22■■□□□ 1.79
MSRB3-208ENST00000538725 CHMP4AQ9BY43 222 aa26.22■■□□□ 1.79
MSRB3-208ENST00000538725 ZNF316A6NFI3 1004 aaPredicted RBP26.21■■□□□ 1.79
MSRB3-208ENST00000538725 RIC3Q7Z5B4 369 aa26.21■■□□□ 1.79
MSRB3-208ENST00000538725 FAM89AQ96GI7 184 aa26.21■■□□□ 1.79
MSRB3-208ENST00000538725 PHAXQ9H814 394 aaKnown RBP26.21■■□□□ 1.79
MSRB3-208ENST00000538725 EPHX2P34913 555 aa26.2■■□□□ 1.78
MSRB3-208ENST00000538725 GRAPQ13588 217 aa26.2■■□□□ 1.78
MSRB3-208ENST00000538725 SUPT20HQ8NEM7 779 aa26.2■■□□□ 1.78
MSRB3-208ENST00000538725 GRAPLQ8TC17 118 aaPredicted RBP26.2■■□□□ 1.78
MSRB3-208ENST00000538725 COL4A5P29400 1685 aa26.19■■□□□ 1.78
MSRB3-208ENST00000538725 GOLGA2Q08379 1002 aa26.19■■□□□ 1.78
MSRB3-208ENST00000538725 CCDC27Q2M243 656 aa26.19■■□□□ 1.78
MSRB3-208ENST00000538725 RTFDC1Q9BY42 306 aaPredicted RBP26.19■■□□□ 1.78
MSRB3-208ENST00000538725 GJA3Q9Y6H8 435 aa26.19■■□□□ 1.78
MSRB3-208ENST00000538725 PPIP5K2O43314 1243 aa26.18■■□□□ 1.78
MSRB3-208ENST00000538725 EAPPQ56P03 285 aaPredicted RBP26.18■■□□□ 1.78
MSRB3-208ENST00000538725 CCDC30Q5VVM6 783 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms