RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 DDX11Q96FC9 970 aa17.63■□□□□ 0.41
SYNE1-236ENST00000537750 FAM227BQ96M60 508 aa17.63■□□□□ 0.41
SYNE1-236ENST00000537750 NRKQ7Z2Y5 1582 aa17.63■□□□□ 0.41
SYNE1-236ENST00000537750 XRN1Q8IZH2 1706 aaKnown RBP17.63■□□□□ 0.41
SYNE1-236ENST00000537750 NYAP1Q6ZVC0 841 aa17.63■□□□□ 0.41
SYNE1-236ENST00000537750 SYTL4Q96C24 671 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-236ENST00000537750 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
SYNE1-236ENST00000537750 GOLGA6L19H0YKK7 550 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 CEBPZQ03701 1054 aaKnown RBP17.62■□□□□ 0.41
SYNE1-236ENST00000537750 IQCB1Q15051 598 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 METP08581 1390 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 CCDC171Q6TFL3 1326 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 PDCP20941 246 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 MAPK8IP2Q13387 824 aaPredicted RBP17.62■□□□□ 0.41
SYNE1-236ENST00000537750 ZNF446Q9NWS9 450 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 ERBB3P21860 1342 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 KCNB2Q92953 911 aa17.62■□□□□ 0.41
SYNE1-236ENST00000537750 CCDC69A6NI79 296 aa17.61■□□□□ 0.41
SYNE1-236ENST00000537750 FAM53CQ9NYF3 392 aa17.61■□□□□ 0.41
SYNE1-236ENST00000537750 EIF2S2P20042 333 aaKnown RBP17.61■□□□□ 0.41
SYNE1-236ENST00000537750 HDGFL1Q5TGJ6 251 aa17.61■□□□□ 0.41
SYNE1-236ENST00000537750 EYA1Q99502 592 aa17.61■□□□□ 0.41
SYNE1-236ENST00000537750 CCDC66A2RUB6 948 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 JAK2O60674 1132 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 ACEP12821 1306 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 C3P01024 1663 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 SLC27A2O14975 620 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 CDC25BP30305 580 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 CCZ1BP86790 482 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 CCZ1P86791 482 aaPredicted RBP17.6■□□□□ 0.41
SYNE1-236ENST00000537750 FBXW7Q969H0 707 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 ERO1AQ96HE7 468 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 MAP3K5Q99683 1374 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 PEAK1Q9H792 1746 aa17.6■□□□□ 0.41
SYNE1-236ENST00000537750 TAF7Q15545 349 aaPredicted RBP17.59■□□□□ 0.41
SYNE1-236ENST00000537750 LRRN4CLQ8ND94 238 aa17.59■□□□□ 0.41
SYNE1-236ENST00000537750 PA2G4Q9UQ80 394 aaKnown RBP17.59■□□□□ 0.41
SYNE1-236ENST00000537750 MON2Q7Z3U7 1717 aa17.59■□□□□ 0.41
SYNE1-236ENST00000537750 TRERF1Q96PN7 1200 aa17.59■□□□□ 0.41
SYNE1-236ENST00000537750 TTC41PQ6P2S7 1318 aa17.59■□□□□ 0.41
SYNE1-236ENST00000537750 NMIQ13287 307 aaPredicted RBP17.58■□□□□ 0.41
SYNE1-236ENST00000537750 TOB2Q14106 344 aaPredicted RBP17.58■□□□□ 0.41
SYNE1-236ENST00000537750 BLOC1S2Q6QNY1 142 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 CCAR2Q8N163 923 aaKnown RBP17.58■□□□□ 0.41
SYNE1-236ENST00000537750 CLASRPQ8N2M8 674 aaKnown RBP17.58■□□□□ 0.41
SYNE1-236ENST00000537750 IL17REQ8NFR9 667 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 ERCC4Q92889 916 aaPredicted RBP17.58■□□□□ 0.41
SYNE1-236ENST00000537750 TIGD1Q96MW7 591 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 ECHDC1Q9NTX5 307 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 RIMBP3CA6NJZ7 1639 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 RIMBP3BA6NNM3 1639 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 RIMBP3Q9UFD9 1639 aa17.58■□□□□ 0.41
SYNE1-236ENST00000537750 SLU7O95391 586 aaKnown RBP17.58■□□□□ 0.4
SYNE1-236ENST00000537750 CDK11BP21127 795 aaKnown RBP17.58■□□□□ 0.4
SYNE1-236ENST00000537750 ERCC6LQ2NKX8 1250 aa17.58■□□□□ 0.4
SYNE1-236ENST00000537750 MAP4K1Q92918 833 aa17.58■□□□□ 0.4
SYNE1-236ENST00000537750 GTF3C6Q969F1 213 aa17.58■□□□□ 0.4
SYNE1-236ENST00000537750 ANXA1P04083 346 aa17.58■□□□□ 0.4
SYNE1-236ENST00000537750 MRFAP1L1Q96HT8 127 aa17.58■□□□□ 0.4
SYNE1-236ENST00000537750 SARM1Q6SZW1 724 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 FTOQ9C0B1 505 aaKnown RBP eCLIP17.57■□□□□ 0.4
SYNE1-236ENST00000537750 USP42Q9H9J4 1324 aaKnown RBP17.57■□□□□ 0.4
SYNE1-236ENST00000537750 PI4KAP2A4QPH2 592 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 GNAT3A8MTJ3 354 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 BECN2A8MW95 431 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 FOSBP53539 338 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 PI4KAP1Q8N8J0 262 aa17.57■□□□□ 0.4
SYNE1-236ENST00000537750 IFIT2P09913 472 aaKnown RBP17.56■□□□□ 0.4
SYNE1-236ENST00000537750 PSMA5P28066 241 aa17.56■□□□□ 0.4
SYNE1-236ENST00000537750 BRF1Q92994 677 aa17.56■□□□□ 0.4
SYNE1-236ENST00000537750 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-236ENST00000537750 OVOS2A0A0J9YW53 1432 aa17.56■□□□□ 0.4
SYNE1-236ENST00000537750 OVOS2Q6IE36 1432 aa17.56■□□□□ 0.4
SYNE1-236ENST00000537750 NEMFO60524 1076 aa17.56■□□□□ 0.4
SYNE1-236ENST00000537750 A0A0D9SFI3 127 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 RPS6KB1P23443 525 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 ADCY9O60503 1353 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 FAM208AQ9UK61 1670 aaKnown RBP17.55■□□□□ 0.4
SYNE1-236ENST00000537750 RESTQ13127 1097 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 HSP90AB4PQ58FF6 505 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 EVI5LQ96CN4 794 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 NAP1L2Q9ULW6 460 aaPredicted RBP17.55■□□□□ 0.4
SYNE1-236ENST00000537750 RGPD1P0DJD0 1748 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 A2ML1A8K2U0 1454 aa17.55■□□□□ 0.4
SYNE1-236ENST00000537750 BEND3Q5T5X7 828 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 AACSQ86V21 672 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 NOL10Q9BSC4 688 aaKnown RBP17.54■□□□□ 0.4
SYNE1-236ENST00000537750 NEO1Q92859 1461 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 CEP170BQ9Y4F5 1589 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-236ENST00000537750 AMPHP49418 695 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 DHX40Q8IX18 779 aaKnown RBP17.54■□□□□ 0.4
SYNE1-236ENST00000537750 GOLPH3LQ9H4A5 285 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 STX1AQ16623 288 aa17.54■□□□□ 0.4
SYNE1-236ENST00000537750 CCDC8Q9H0W5 538 aaPredicted RBP17.54■□□□□ 0.4
SYNE1-236ENST00000537750 H3BQV1 296 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 PDIA4P13667 645 aaKnown RBP17.53■□□□□ 0.4
SYNE1-236ENST00000537750 CAPN2P17655 700 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 PDE4CQ08493 712 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 SLFNL1Q499Z3 407 aa17.53■□□□□ 0.4
SYNE1-236ENST00000537750 IFFO2Q5TF58 517 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms