RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ASXL1Q8IXJ9 1541 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 PNMA6AP0CW24 399 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 UBE2HP62256 183 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 CHAMP1Q96JM3 812 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 MED4Q9NPJ6 270 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 NSD3Q9BZ95 1437 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 TPM1P09493 284 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 LMAN1P49257 510 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 SETQ01105 290 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 SEPT12Q8IYM1 358 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 ZNF446Q9NWS9 450 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 ATP8B1O43520 1251 aa12.77□□□□□ -0.36
CLSTN3-207ENST00000537408 LRCH2Q5VUJ6 765 aa12.77□□□□□ -0.36
CLSTN3-207ENST00000537408 GADD45BO75293 160 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 SART3Q15020 963 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 GJD4Q96KN9 370 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 SBNO1A3KN83 1393 aa12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 TRIM27P14373 513 aa12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 FAM200AQ8TCP9 573 aa12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 USP26Q9BXU7 913 aa12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 GDPD2Q9HCC8 539 aa12.77□□□□□ -0.37
CLSTN3-207ENST00000537408 CCDC196A0A1B0GTZ2 297 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 ZSCAN25Q6NSZ9 544 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 NRDCO43847 1150 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 APBA3O96018 575 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 ZNF530Q6P9A1 599 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 PTPRCP08575 1304 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 CABP4P57796 275 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 UBXN4Q92575 508 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 SMARCE1Q969G3 411 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 RAI14Q9P0K7 980 aa12.76□□□□□ -0.37
CLSTN3-207ENST00000537408 SOS2Q07890 1332 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 AK9Q5TCS8 1911 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 SSR1P43307 286 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 TMX3Q96JJ7 454 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 ZBTB40Q9NUA8 1239 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 TNS3Q68CZ2 1445 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 ELP1O95163 1332 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 TULP1O00294 542 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 NEK4P51957 841 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 ELL2O00472 640 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 OAS2P29728 719 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 CLCN6P51797 869 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 TMEM57Q8N5G2 664 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 DNAAF4Q8WXU2 420 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 INTS4Q96HW7 963 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 PLCD4Q9BRC7 762 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 FHOD1Q9Y613 1164 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 MROH1Q8NDA8 1641 aa12.75□□□□□ -0.37
CLSTN3-207ENST00000537408 TRDNQ13061 729 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 GIMAP6Q6P9H5 292 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 MMS22LQ6ZRQ5 1243 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 ZCRB1Q8TBF4 217 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 EXOC4Q96A65 974 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 ACTN2P35609 894 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 LRMPQ12912 555 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 SUGP1Q8IWZ8 645 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 TMOD3Q9NYL9 352 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 LCMT1Q9UIC8 334 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 PLEKHG2Q9H7P9 1386 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 AMOTQ4VCS5 1084 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 ARHGAP29Q52LW3 1261 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 CLIP2Q9UDT6 1046 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 KIAA0232Q92628 1395 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 H2AFXP16104 143 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 SMARCC1Q92922 1105 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 FAM107BQ9H098 131 aa12.74□□□□□ -0.37
CLSTN3-207ENST00000537408 PLA2G4AP47712 749 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 MAP2K1Q02750 393 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 E2F4Q16254 413 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 SWT1Q5T5J6 900 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 RPAINQ86UA6 219 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 TMEM87AQ8NBN3 555 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 CEP89Q96ST8 783 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 STK31Q9BXU1 1019 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 PSD3Q9NYI0 1048 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 NOB1Q9ULX3 412 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 TMEM131LA2VDJ0 1609 aa12.73□□□□□ -0.37
CLSTN3-207ENST00000537408 SMARCA5O60264 1052 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 UBR1Q8IWV7 1749 aa12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 TUBB4AP04350 444 aa12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 CCDC27Q2M243 656 aa12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 NEXMIFQ5QGS0 1516 aa12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 PTPRUQ92729 1446 aa12.72□□□□□ -0.37
CLSTN3-207ENST00000537408 CASTP20810 708 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 POLD1P28340 1107 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 ERCC6LQ2NKX8 1250 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 PACS2Q86VP3 889 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 IQUBQ8NA54 791 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 GIMAP7Q8NHV1 300 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 IP6K1Q92551 441 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 THRAP3Q9Y2W1 955 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 SULT6B1Q6IMI4 303 aa12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 MKRN1Q9UHC7 482 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-207ENST00000537408 ZNF75DP51815 510 aa12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 MNAT1P51948 309 aa12.71□□□□□ -0.38
CLSTN3-207ENST00000537408 MAP3K11Q16584 847 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms