RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MTIF2P46199 727 aaKnown RBP12.27□□□□□ -0.44
CLIP1-209ENST00000537178 DNA2P51530 1060 aa12.27□□□□□ -0.44
CLIP1-209ENST00000537178 EHMT1Q9H9B1 1298 aa12.27□□□□□ -0.44
CLIP1-209ENST00000537178 COMMD10Q9Y6G5 202 aa12.27□□□□□ -0.44
CLIP1-209ENST00000537178 RTEL1-TNFRSF6BF6WH68 1400 aa12.27□□□□□ -0.45
CLIP1-209ENST00000537178 IQSEC2Q5JU85 1478 aa12.27□□□□□ -0.45
CLIP1-209ENST00000537178 AMPD3Q01432 767 aa12.27□□□□□ -0.45
CLIP1-209ENST00000537178 ZNF444Q8N0Y2 327 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-209ENST00000537178 TMEM57Q8N5G2 664 aa12.27□□□□□ -0.45
CLIP1-209ENST00000537178 SLC12A7Q9Y666 1083 aa12.27□□□□□ -0.45
CLIP1-209ENST00000537178 CCDC85AQ96PX6 553 aaPredicted RBP12.27□□□□□ -0.45
CLIP1-209ENST00000537178 PYM1Q9BRP8 204 aaKnown RBP12.27□□□□□ -0.45
CLIP1-209ENST00000537178 TMCO5BA8MYB1 307 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 CBX1P83916 185 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 TICAM2Q86XR7 235 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 FERMT1Q9BQL6 677 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLIP1-209ENST00000537178 LIMCH1Q9UPQ0 1083 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 GNAT3A8MTJ3 354 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 CAVIN2O95810 425 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 AFAP1Q8N556 730 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 BBXQ8WY36 941 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-209ENST00000537178 SPINK5Q9NQ38 1064 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-209ENST00000537178 USP32Q8NFA0 1604 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 POLR3GO15318 223 aaPredicted RBP12.26□□□□□ -0.45
CLIP1-209ENST00000537178 STXBP4Q6ZWJ1 553 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 BAG4O95429 457 aaKnown RBP12.26□□□□□ -0.45
CLIP1-209ENST00000537178 CPLX3Q8WVH0 158 aa12.26□□□□□ -0.45
CLIP1-209ENST00000537178 TTC21AQ8NDW8 1320 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 ACTN2P35609 894 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 CCDC96Q2M329 555 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 BICDL1Q6ZP65 573 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 TCP11L1Q9NUJ3 509 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 ABCA6Q8N139 1617 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 NRXN1Q9ULB1 1477 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 FERP16591 822 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 DZIP1Q86YF9 867 aaKnown RBP12.25□□□□□ -0.45
CLIP1-209ENST00000537178 FAM114A1Q8IWE2 563 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 FSIP1Q8NA03 581 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 CCDC12Q8WUD4 166 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-209ENST00000537178 DDX12PQ92771 950 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 BOLA2Q9H3K6 86 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 A0A087WZG4 1122 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 ZNF213O14771 459 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 RANBP6O60518 1105 aaKnown RBP12.25□□□□□ -0.45
CLIP1-209ENST00000537178 MCM5P33992 734 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 CCDC40Q4G0X9 1142 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 CTR9Q6PD62 1173 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 TMPOP42166 694 aaKnown RBP12.25□□□□□ -0.45
CLIP1-209ENST00000537178 NLRP5P59047 1200 aa12.25□□□□□ -0.45
CLIP1-209ENST00000537178 SSRP1Q08945 709 aaKnown RBP12.25□□□□□ -0.45
CLIP1-209ENST00000537178 SLF2Q8IX21 1173 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 EHBP1Q8NDI1 1231 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 CALML4Q96GE6 196 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 PPRC1Q5VV67 1664 aaKnown RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 NUTM2BA6NNL0 878 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 NUTM2EB1AL46 878 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 PPM1FP49593 454 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 TCERG1LQ5VWI1 586 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 NUTM2AQ8IVF1 878 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 CEP112Q8N8E3 955 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 USP25Q9UHP3 1055 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 GOLGA8AA7E2F4 631 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 GOLGA8BA8MQT2 603 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 FERMT2Q96AC1 680 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 TSNARE1Q96NA8 513 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 TRMT1Q9NXH9 659 aaKnown RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 KDM5AP29375 1690 aaKnown RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 IFIT3O14879 490 aaKnown RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 IDEP14735 1019 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 KANK3Q6NY19 840 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 PRDM10Q9NQV6 1147 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 ASXL1Q8IXJ9 1541 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 STX1AQ16623 288 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 CATIPQ7Z7H3 387 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 FBF1Q8TES7 1133 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 C16orf45Q96MC5 204 aaPredicted RBP12.24□□□□□ -0.45
CLIP1-209ENST00000537178 MROH2AA6NES4 1674 aa12.24□□□□□ -0.45
CLIP1-209ENST00000537178 SLFN5Q08AF3 891 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 IFIT5Q13325 482 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 CKAP2LQ8IYA6 745 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 KCNH5Q8NCM2 988 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 PLVAPQ9BX97 442 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 PABPN1LA6NDY0 278 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 NOP2P46087 812 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 BMS1Q14692 1282 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 IFI16Q16666 785 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 MAATS1Q7Z4T9 603 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 ABCC1P33527 1531 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 GUCY1B3Q02153 619 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 MAPK8IP2Q13387 824 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 PRPF4BQ13523 1007 aaKnown RBP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 CCDC82Q8N4S0 544 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 IKBKGQ9Y6K9 419 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 GTF2F1P35269 517 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLIP1-209ENST00000537178 UBA7P41226 1012 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 ALDH1L2Q3SY69 923 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 LRRC27Q9C0I9 530 aa12.23□□□□□ -0.45
CLIP1-209ENST00000537178 SLC5A1P13866 664 aa12.22□□□□□ -0.45
CLIP1-209ENST00000537178 XPCQ01831 940 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms