RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-234	ENST00000536990	KDM4A	O75164	1064 aa		13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	AIMP1	Q12904	312 aa	Known RBP	13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	NECTIN1	Q15223	517 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	GRM8	O00222	908 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	DTNB	O60941	627 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	TPRN	Q4KMQ1	711 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	TTC12	Q9H892	705 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	CYP46A1	Q9Y6A2	500 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	GIMAP6	Q6P9H5	292 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	MYRIP	Q8NFW9	859 aa		13.8	□□□□□ -0.2
SYNE1-234	ENST00000536990	ME3	Q16798	604 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	PROSER2	Q86WR7	435 aa	Predicted RBP	13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	AP5Z1	O43299	807 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	MTERF4	Q7Z6M4	381 aa	Known RBP	13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	AACS	Q86V21	672 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	SUCLG2	Q96I99	432 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	SPTLC3	Q9NUV7	552 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	CCDC171	Q6TFL3	1326 aa		13.79	□□□□□ -0.2
SYNE1-234	ENST00000536990	SIPA1L3	O60292	1781 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	ZC3H6	P61129	1189 aa	Known RBP	13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	RAPGEF4	Q8WZA2	1011 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	EVI5L	Q96CN4	794 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	CAMTA1	Q9Y6Y1	1673 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	RGPD5	Q99666	1765 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	RIC3	Q7Z5B4	369 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	BICC1	Q9H694	974 aa	Known RBP	13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	ERBB3	P21860	1342 aa		13.78	□□□□□ -0.2
SYNE1-234	ENST00000536990	TPCN1	Q9ULQ1	816 aa		13.77	□□□□□ -0.2
SYNE1-234	ENST00000536990	RBM8A	Q9Y5S9	174 aa	Known RBP	13.77	□□□□□ -0.2
SYNE1-234	ENST00000536990	UTY	O14607	1347 aa		13.77	□□□□□ -0.2
SYNE1-234	ENST00000536990	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.77	□□□□□ -0.2
SYNE1-234	ENST00000536990	PDIA6	Q15084	440 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	CREB3L3	Q68CJ9	461 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	ZNF790	Q6PG37	636 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	DDX54	Q8TDD1	881 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	PRIMPOL	Q96LW4	560 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	SLC39A6	Q13433	755 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	LARP1	Q6PKG0	1096 aa	Known RBP	13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	NECAB1	Q8N987	351 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	MAP4K1	Q92918	833 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	KAZALD1	Q96I82	304 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	PKNOX2	Q96KN3	472 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	SNRK	Q9NRH2	765 aa		13.77	□□□□□ -0.21
SYNE1-234	ENST00000536990	SASH1	O94885	1247 aa		13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	COL9A3	Q14050	684 aa	Predicted RBP	13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	NLRP2	Q9NX02	1062 aa		13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	VPS37C	A5D8V6	355 aa	Predicted RBP	13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	NEXN	Q0ZGT2	675 aa		13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	FAM227B	Q96M60	508 aa		13.76	□□□□□ -0.21
SYNE1-234	ENST00000536990	ZKSCAN1	P17029	563 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	HMGN5	P82970	282 aa	Known RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	EAF2	Q96CJ1	260 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	SLC52A2	Q9HAB3	445 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	C1orf167	Q5SNV9	1468 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	LMTK3	Q96Q04	1460 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	IGKV5-2	P06315	115 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	MYL6B	P14649	208 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	TAT	P17735	454 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	NMI	Q13287	307 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	TTC6	Q86TZ1	520 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	C19orf44	Q9H6X5	657 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	ADAMTS7	Q9UKP4	1686 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	NPHP3	Q7Z494	1330 aa		13.75	□□□□□ -0.21
SYNE1-234	ENST00000536990	HIP1	O00291	1037 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	SLC27A2	O14975	620 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	KCNF1	Q9H3M0	494 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	NFATC2IP	Q8NCF5	419 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	JARID2	Q92833	1246 aa	Predicted RBP	13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	SIL1	Q9H173	461 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	ADAMTSL3	P82987	1691 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	ELP1	O95163	1332 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	LARP1B	Q659C4	914 aa	Known RBP	13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	CDC37L1	Q7L3B6	337 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	XAGE3	Q8WTP9	111 aa		13.74	□□□□□ -0.21
SYNE1-234	ENST00000536990	KIF1A	Q12756	1690 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	NEURL1B	A8MQ27	555 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	CCDC192	P0DO97	292 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	PHKG2	P15735	406 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	KCNJ4	P48050	445 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	KIAA1524	Q8TCG1	905 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	PDIA4	P13667	645 aa	Known RBP	13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	KRT85	P78386	507 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	COPS6	Q7L5N1	327 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	MYD88	Q99836	296 aa		13.73	□□□□□ -0.21
SYNE1-234	ENST00000536990	SCN11A	Q9UI33	1791 aa		13.72	□□□□□ -0.21
SYNE1-234	ENST00000536990		A0A0D9SFI3	127 aa		13.72	□□□□□ -0.21
SYNE1-234	ENST00000536990	PSMA5	P28066	241 aa		13.72	□□□□□ -0.21
SYNE1-234	ENST00000536990	ZNF710	Q8N1W2	664 aa		13.72	□□□□□ -0.21
SYNE1-234	ENST00000536990	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE1-234	ENST00000536990	KDM6A	O15550	1401 aa	Predicted RBP	13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms