RNA–Protein interactions for RNA: ENST00000536295.1

RTN3P1-201, Transcript of reticulon 3 pseudogene 1, humanhuman

BASIC

Gene RTN3P1, Length 711 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3P1-201ENST00000536295 HOXB7P09629 217 aa18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 VEGFAP15692 232 aaPredicted RBP18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 FKBP4Q02790 459 aaKnown RBP eCLIP18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 HSP90AB3PQ58FF7 597 aa18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 C3orf67Q6ZVT6 689 aa18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 ZNF428Q96B54 188 aa18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 ZNF277Q9NRM2 450 aaPredicted RBP18.57■□□□□ 0.56
RTN3P1-201ENST00000536295 ZNF853P0CG23 659 aa18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 GNAI1P63096 354 aa18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 CALD1Q05682 793 aaKnown RBP18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 RTKN2Q8IZC4 609 aa18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 IFT57Q9NWB7 429 aa18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 DBF4Q9UBU7 674 aaPredicted RBP18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 RIC1Q4ADV7 1423 aa18.56■□□□□ 0.56
RTN3P1-201ENST00000536295 ELL2O00472 640 aaPredicted RBP18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 TCIRG1Q13488 830 aa18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 NLRP10Q86W26 655 aa18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 RBM17Q96I25 401 aaKnown RBP18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 NLRP3Q96P20 1036 aa18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 CEP350Q5VT06 3117 aa18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 DICER1Q9UPY3 1922 aaKnown RBP18.55■□□□□ 0.56
RTN3P1-201ENST00000536295 ANP32CO43423 234 aa18.54■□□□□ 0.56
RTN3P1-201ENST00000536295 DDNO94850 711 aaPredicted RBP18.54■□□□□ 0.56
RTN3P1-201ENST00000536295 HOXA10P31260 410 aaPredicted RBP18.54■□□□□ 0.56
RTN3P1-201ENST00000536295 APLP1P51693 650 aa18.54■□□□□ 0.56
RTN3P1-201ENST00000536295 FSTL1Q12841 308 aa18.54■□□□□ 0.56
RTN3P1-201ENST00000536295 POTECB2RU33 542 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 SLC51AQ86UW1 340 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 SYNE4Q8N205 404 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 SMC1BQ8NDV3 1235 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 PLBD2Q8NHP8 589 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 MRS2Q9HD23 443 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 TRMT112Q9UI30 125 aaKnown RBP18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 ANKRD36CQ5JPF3 1778 aa18.53■□□□□ 0.56
RTN3P1-201ENST00000536295 PPEF1O14829 653 aaPredicted RBP18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 HCLS1P14317 486 aaPredicted RBP18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 SLC10A5Q5PT55 438 aa18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 ANKRD13DQ6ZTN6 518 aa18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 CRAMP1Q96RY5 1269 aa18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 HYPKQ9NX55 129 aa18.52■□□□□ 0.56
RTN3P1-201ENST00000536295 IARSP41252 1262 aaKnown RBP18.51■□□□□ 0.55
RTN3P1-201ENST00000536295 WDR90Q96KV7 1748 aa18.51■□□□□ 0.55
RTN3P1-201ENST00000536295 RNF123Q5XPI4 1314 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 SH3TC1Q8TE82 1336 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 ATP5J2-PTCD1G3V325 749 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 HTRA3P83110 453 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 CC2D2BQ6DHV5 1058 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 C8orf58Q8NAV2 365 aa18.5■□□□□ 0.55
RTN3P1-201ENST00000536295 ZNF541Q9H0D2 1346 aa18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 TSR2Q969E8 191 aaKnown RBP18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 PSMD1Q99460 953 aa18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 PHAXQ9H814 394 aaKnown RBP18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 SNED1Q8TER0 1413 aa18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 ABCC4O15439 1325 aa18.49■□□□□ 0.55
RTN3P1-201ENST00000536295 RIC3Q7Z5B4 369 aa18.48■□□□□ 0.55
RTN3P1-201ENST00000536295 TMX4Q9H1E5 349 aaPredicted RBP18.48■□□□□ 0.55
RTN3P1-201ENST00000536295 GOLGA2Q08379 1002 aa18.47■□□□□ 0.55
RTN3P1-201ENST00000536295 RTL5Q5HYW3 569 aaPredicted RBP18.47■□□□□ 0.55
RTN3P1-201ENST00000536295 JDP2Q8WYK2 163 aa18.47■□□□□ 0.55
RTN3P1-201ENST00000536295 FAM89AQ96GI7 184 aa18.47■□□□□ 0.55
RTN3P1-201ENST00000536295 ISCA1Q9BUE6 129 aa18.47■□□□□ 0.55
RTN3P1-201ENST00000536295 DDX46Q7L014 1031 aaKnown RBP18.46■□□□□ 0.55
RTN3P1-201ENST00000536295 WWC1Q8IX03 1113 aa18.46■□□□□ 0.55
RTN3P1-201ENST00000536295 TSPYL6Q8N831 410 aa18.46■□□□□ 0.55
RTN3P1-201ENST00000536295 SALL2Q9Y467 1007 aaPredicted RBP18.46■□□□□ 0.55
RTN3P1-201ENST00000536295 LAMB2P55268 1798 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 IQCA1LA6NCM1 817 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 POTEIP0CG38 1075 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 POTEJP0CG39 1038 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 CCDC27Q2M243 656 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 GRIPAP1Q4V328 841 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 LARGE2Q8N3Y3 721 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 ATP6V0A2Q9Y487 856 aa18.45■□□□□ 0.54
RTN3P1-201ENST00000536295 FZD9O00144 591 aa18.44■□□□□ 0.54
RTN3P1-201ENST00000536295 CCDC30Q5VVM6 783 aa18.44■□□□□ 0.54
RTN3P1-201ENST00000536295 DNAJC5GQ8N7S2 189 aa18.44■□□□□ 0.54
RTN3P1-201ENST00000536295 L3MBTL3Q96JM7 780 aaPredicted RBP18.44■□□□□ 0.54
RTN3P1-201ENST00000536295 BBOX1O75936 387 aa18.43■□□□□ 0.54
RTN3P1-201ENST00000536295 GRAPQ13588 217 aa18.43■□□□□ 0.54
RTN3P1-201ENST00000536295 GRAPLQ8TC17 118 aaPredicted RBP18.43■□□□□ 0.54
RTN3P1-201ENST00000536295 MYD88Q99836 296 aa18.43■□□□□ 0.54
RTN3P1-201ENST00000536295 COL4A5P29400 1685 aa18.43■□□□□ 0.54
RTN3P1-201ENST00000536295 PPIP5K2O43314 1243 aa18.42■□□□□ 0.54
RTN3P1-201ENST00000536295 EIF6P56537 245 aaKnown RBP18.42■□□□□ 0.54
RTN3P1-201ENST00000536295 CHADLQ6NUI6 762 aa18.42■□□□□ 0.54
RTN3P1-201ENST00000536295 TAF1DQ9H5J8 278 aaPredicted RBP18.42■□□□□ 0.54
RTN3P1-201ENST00000536295 GJA3Q9Y6H8 435 aa18.42■□□□□ 0.54
RTN3P1-201ENST00000536295 IRS4O14654 1257 aaPredicted RBP18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 TRIM28Q13263 835 aaKnown RBP18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 AOC3Q16853 763 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 EAPPQ56P03 285 aaPredicted RBP18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 DPP8Q6V1X1 898 aaPredicted RBP18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 SP8Q8IXZ3 490 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 NIM1KQ8IY84 436 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 GPC2Q8N158 579 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 CHMP4AQ9BY43 222 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 HACL1Q9UJ83 578 aa18.41■□□□□ 0.54
RTN3P1-201ENST00000536295 DDX60Q8IY21 1712 aaKnown RBP18.4■□□□□ 0.54
RTN3P1-201ENST00000536295 DDX58O95786 925 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms