RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 PI4KAP1Q8N8J0 262 aa25.47■■□□□ 1.67
CPSF1-209ENST00000532725 ZNF622Q969S3 477 aaKnown RBP eCLIP25.46■■□□□ 1.67
CPSF1-209ENST00000532725 METTL22Q9BUU2 404 aaPredicted RBP25.46■■□□□ 1.67
CPSF1-209ENST00000532725 ABCC12Q96J65 1359 aa25.45■■□□□ 1.67
CPSF1-209ENST00000532725 BRCA1P38398 1863 aaKnown RBP25.45■■□□□ 1.67
CPSF1-209ENST00000532725 HNRNPUQ00839 825 aaKnown RBP eCLIP25.45■■□□□ 1.66
CPSF1-209ENST00000532725 FLIIQ13045 1269 aa25.45■■□□□ 1.66
CPSF1-209ENST00000532725 STYK1Q6J9G0 422 aa25.45■■□□□ 1.66
CPSF1-209ENST00000532725 MASTLQ96GX5 879 aa25.45■■□□□ 1.66
CPSF1-209ENST00000532725 TRMT112Q9UI30 125 aaKnown RBP25.45■■□□□ 1.66
CPSF1-209ENST00000532725 MAP3K2Q9Y2U5 619 aa25.45■■□□□ 1.66
CPSF1-209ENST00000532725 SYNE4Q8N205 404 aa25.44■■□□□ 1.66
CPSF1-209ENST00000532725 MYD88Q99836 296 aa25.44■■□□□ 1.66
CPSF1-209ENST00000532725 ADCY9O60503 1353 aa25.44■■□□□ 1.66
CPSF1-209ENST00000532725 RNF123Q5XPI4 1314 aa25.43■■□□□ 1.66
CPSF1-209ENST00000532725 CRY2Q49AN0 593 aa25.43■■□□□ 1.66
CPSF1-209ENST00000532725 ZNF428Q96B54 188 aa25.43■■□□□ 1.66
CPSF1-209ENST00000532725 NPR1P16066 1061 aa25.42■■□□□ 1.66
CPSF1-209ENST00000532725 CNKSR1Q969H4 720 aa25.42■■□□□ 1.66
CPSF1-209ENST00000532725 CACNA1FO60840 1977 aa25.41■■□□□ 1.66
CPSF1-209ENST00000532725 ANKRD36CQ5JPF3 1778 aa25.41■■□□□ 1.66
CPSF1-209ENST00000532725 SH3TC1Q8TE82 1336 aa25.4■■□□□ 1.66
CPSF1-209ENST00000532725 RIC1Q4ADV7 1423 aa25.4■■□□□ 1.66
CPSF1-209ENST00000532725 FKBP5Q13451 457 aaPredicted RBP25.4■■□□□ 1.66
CPSF1-209ENST00000532725 ARHGAP27Q6ZUM4 889 aa25.4■■□□□ 1.66
CPSF1-209ENST00000532725 C3orf67Q6ZVT6 689 aa25.4■■□□□ 1.66
CPSF1-209ENST00000532725 CCDC191Q8NCU4 936 aa25.4■■□□□ 1.66
CPSF1-209ENST00000532725 DLEC1Q9Y238 1755 aa25.39■■□□□ 1.66
CPSF1-209ENST00000532725 ARFGEF2Q9Y6D5 1785 aa25.39■■□□□ 1.66
CPSF1-209ENST00000532725 IGKV5-2P06315 115 aa25.39■■□□□ 1.66
CPSF1-209ENST00000532725 HCLS1P14317 486 aaPredicted RBP25.39■■□□□ 1.66
CPSF1-209ENST00000532725 FAM89AQ96GI7 184 aa25.39■■□□□ 1.66
CPSF1-209ENST00000532725 NLRP3Q96P20 1036 aa25.39■■□□□ 1.66
CPSF1-209ENST00000532725 YY1P25490 414 aa25.38■■□□□ 1.65
CPSF1-209ENST00000532725 MRPL50Q8N5N7 158 aaKnown RBP25.38■■□□□ 1.65
CPSF1-209ENST00000532725 COL11A2P13942 1736 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-209ENST00000532725 CT47B1P0C2W7 299 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-209ENST00000532725 HOXA10P31260 410 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-209ENST00000532725 ZBTB38Q8NAP3 1195 aaPredicted RBP25.37■■□□□ 1.65
CPSF1-209ENST00000532725 DNAAF4Q8WXU2 420 aa25.37■■□□□ 1.65
CPSF1-209ENST00000532725 SSH1Q8WYL5 1049 aa25.37■■□□□ 1.65
CPSF1-209ENST00000532725 ALDH1B1P30837 517 aa25.36■■□□□ 1.65
CPSF1-209ENST00000532725 NEXNQ0ZGT2 675 aa25.36■■□□□ 1.65
CPSF1-209ENST00000532725 PRPF40BQ6NWY9 871 aaKnown RBP25.36■■□□□ 1.65
CPSF1-209ENST00000532725 C7orf43Q8WVR3 580 aa25.36■■□□□ 1.65
CPSF1-209ENST00000532725 CWC25Q9NXE8 425 aaPredicted RBP25.36■■□□□ 1.65
CPSF1-209ENST00000532725 ARFGEF1Q9Y6D6 1849 aa25.35■■□□□ 1.65
CPSF1-209ENST00000532725 CHD4Q14839 1912 aa25.34■■□□□ 1.65
CPSF1-209ENST00000532725 TNRC6CQ9HCJ0 1690 aaKnown RBP25.34■■□□□ 1.65
CPSF1-209ENST00000532725 NEURL1BA8MQ27 555 aa25.34■■□□□ 1.65
CPSF1-209ENST00000532725 C21orf2O43822 256 aa25.34■■□□□ 1.65
CPSF1-209ENST00000532725 PCCAP05165 728 aaPredicted RBP25.34■■□□□ 1.65
CPSF1-209ENST00000532725 CWF19L2Q2TBE0 894 aaKnown RBP25.34■■□□□ 1.65
CPSF1-209ENST00000532725 ALDH1L2Q3SY69 923 aa25.34■■□□□ 1.65
CPSF1-209ENST00000532725 RTL5Q5HYW3 569 aaPredicted RBP25.34■■□□□ 1.65
CPSF1-209ENST00000532725 F6X3S4 739 aa25.33■■□□□ 1.65
CPSF1-209ENST00000532725 RPGRQ92834 1020 aaKnown RBP25.33■■□□□ 1.65
CPSF1-209ENST00000532725 CRAMP1Q96RY5 1269 aa25.33■■□□□ 1.65
CPSF1-209ENST00000532725 IRS4O14654 1257 aaPredicted RBP25.32■■□□□ 1.64
CPSF1-209ENST00000532725 JARID2Q92833 1246 aaPredicted RBP25.32■■□□□ 1.64
CPSF1-209ENST00000532725 RBM17Q96I25 401 aaKnown RBP25.32■■□□□ 1.64
CPSF1-209ENST00000532725 ZNF219Q9P2Y4 722 aaPredicted RBP25.32■■□□□ 1.64
CPSF1-209ENST00000532725 SLX4Q8IY92 1834 aa25.32■■□□□ 1.64
CPSF1-209ENST00000532725 ZBED9Q6R2W3 1325 aa25.32■■□□□ 1.64
CPSF1-209ENST00000532725 LINS1Q8NG48 757 aa25.31■■□□□ 1.64
CPSF1-209ENST00000532725 SF3B3Q15393 1217 aaKnown RBP25.3■■□□□ 1.64
CPSF1-209ENST00000532725 BEND3Q5T5X7 828 aa25.3■■□□□ 1.64
CPSF1-209ENST00000532725 H7C1W4 665 aa25.29■■□□□ 1.64
CPSF1-209ENST00000532725 GCKRQ14397 625 aa25.29■■□□□ 1.64
CPSF1-209ENST00000532725 BCL2L13Q9BXK5 485 aa25.29■■□□□ 1.64
CPSF1-209ENST00000532725 NFKBIEO00221 500 aa25.27■■□□□ 1.64
CPSF1-209ENST00000532725 HSP90B1P14625 803 aaKnown RBP25.27■■□□□ 1.64
CPSF1-209ENST00000532725 RARSP54136 660 aaKnown RBP25.27■■□□□ 1.64
CPSF1-209ENST00000532725 BRPF1P55201 1214 aaPredicted RBP25.27■■□□□ 1.64
CPSF1-209ENST00000532725 SOGA3Q5TF21 947 aa25.27■■□□□ 1.64
CPSF1-209ENST00000532725 CDHR2Q9BYE9 1310 aa25.27■■□□□ 1.64
CPSF1-209ENST00000532725 PRELPP51888 382 aa25.26■■□□□ 1.63
CPSF1-209ENST00000532725 OLFM4Q6UX06 510 aa25.26■■□□□ 1.63
CPSF1-209ENST00000532725 SMC4Q9NTJ3 1288 aa25.26■■□□□ 1.63
CPSF1-209ENST00000532725 PTPRCP08575 1304 aa25.26■■□□□ 1.63
CPSF1-209ENST00000532725 PDE8AO60658 829 aa25.25■■□□□ 1.63
CPSF1-209ENST00000532725 RASSF7Q02833 373 aa25.25■■□□□ 1.63
CPSF1-209ENST00000532725 DDX46Q7L014 1031 aaKnown RBP25.25■■□□□ 1.63
CPSF1-209ENST00000532725 ABCC4O15439 1325 aa25.25■■□□□ 1.63
CPSF1-209ENST00000532725 BBOX1O75936 387 aa25.24■■□□□ 1.63
CPSF1-209ENST00000532725 CASP7P55210 303 aa25.24■■□□□ 1.63
CPSF1-209ENST00000532725 C9orf131Q5VYM1 1079 aa25.24■■□□□ 1.63
CPSF1-209ENST00000532725 DDX60Q8IY21 1712 aaKnown RBP25.23■■□□□ 1.63
CPSF1-209ENST00000532725 CCDC93Q567U6 631 aa25.23■■□□□ 1.63
CPSF1-209ENST00000532725 SLC4A10Q6U841 1118 aa25.23■■□□□ 1.63
CPSF1-209ENST00000532725 GRAPQ13588 217 aa25.22■■□□□ 1.63
CPSF1-209ENST00000532725 CC2D2BQ6DHV5 1058 aa25.22■■□□□ 1.63
CPSF1-209ENST00000532725 UBE3BQ7Z3V4 1068 aa25.22■■□□□ 1.63
CPSF1-209ENST00000532725 RTKN2Q8IZC4 609 aa25.22■■□□□ 1.63
CPSF1-209ENST00000532725 GRAPLQ8TC17 118 aaPredicted RBP25.22■■□□□ 1.63
CPSF1-209ENST00000532725 LAMB2P55268 1798 aa25.21■■□□□ 1.63
CPSF1-209ENST00000532725 LTBP3Q9NS15 1303 aa25.21■■□□□ 1.63
CPSF1-209ENST00000532725 PPEF1O14829 653 aaPredicted RBP25.21■■□□□ 1.63
CPSF1-209ENST00000532725 ALDH1L1O75891 902 aa25.21■■□□□ 1.63
CPSF1-209ENST00000532725 LMNB1P20700 586 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms