RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 INPP5BP32019 993 aa6.97□□□□□ -1.29
CD44-233ENST00000531141 ZAP70P43403 619 aa6.97□□□□□ -1.29
CD44-233ENST00000531141 FAM182BQ5T319 152 aa6.97□□□□□ -1.29
CD44-233ENST00000531141 ANO2Q9NQ90 1003 aa6.97□□□□□ -1.29
CD44-233ENST00000531141 EIF1AXP47813 144 aaKnown RBP6.96□□□□□ -1.3
CD44-233ENST00000531141 GAS6Q14393 721 aa6.96□□□□□ -1.3
CD44-233ENST00000531141 NOM1Q5C9Z4 860 aaKnown RBP6.96□□□□□ -1.3
CD44-233ENST00000531141 FAM26DQ5JW98 314 aa6.96□□□□□ -1.3
CD44-233ENST00000531141 MBIPQ9NS73 344 aa6.96□□□□□ -1.3
CD44-233ENST00000531141 MARK1Q9P0L2 795 aa6.96□□□□□ -1.3
CD44-233ENST00000531141 ZBTB7CA1YPR0 619 aa6.95□□□□□ -1.3
CD44-233ENST00000531141 COL25A1Q9BXS0 654 aaPredicted RBP6.95□□□□□ -1.3
CD44-233ENST00000531141 C11orf16Q9NQ32 467 aa6.95□□□□□ -1.3
CD44-233ENST00000531141 NSFL1CQ9UNZ2 370 aaKnown RBP6.95□□□□□ -1.3
CD44-233ENST00000531141 KCNH4Q9UQ05 1017 aa6.95□□□□□ -1.3
CD44-233ENST00000531141 ZBTB39O15060 712 aa6.94□□□□□ -1.3
CD44-233ENST00000531141 CD33P20138 364 aa6.94□□□□□ -1.3
CD44-233ENST00000531141 MX2P20592 715 aa6.94□□□□□ -1.3
CD44-233ENST00000531141 SND1Q7KZF4 910 aaKnown RBP eCLIP6.94□□□□□ -1.3
CD44-233ENST00000531141 GPR161Q8N6U8 529 aaKnown RBP6.94□□□□□ -1.3
CD44-233ENST00000531141 FAM181BA6NEQ2 426 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 OPLAHO14841 1288 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 BMP4P12644 408 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 MAP2K3P46734 347 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 ARHGAP4P98171 946 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 RGL4Q8IZJ4 473 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 PIK3R5Q8WYR1 880 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 STRN4Q9NRL3 753 aa6.93□□□□□ -1.3
CD44-233ENST00000531141 RTCBQ9Y3I0 505 aaKnown RBP6.93□□□□□ -1.3
CD44-233ENST00000531141 RPLP1P05386 114 aaKnown RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 PCSK2P16519 638 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 MZF1P28698 734 aaPredicted RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 GRNP28799 593 aaKnown RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 SFSWAPQ12872 951 aaKnown RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 RNFT1Q5M7Z0 435 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 ATCAYQ86WG3 371 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 EDEM1Q92611 657 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 EFCC1Q9HA90 598 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 AVENQ9NQS1 362 aaPredicted RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 BIN2Q9UBW5 565 aaPredicted RBP6.92□□□□□ -1.3
CD44-233ENST00000531141 HCN2Q9UL51 889 aa6.92□□□□□ -1.3
CD44-233ENST00000531141 NDUFB5O43674 189 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 PDGFAP04085 211 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 GMPRP36959 345 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 USP5P45974 858 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 KRT76Q01546 638 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 SRSF11Q05519 484 aaKnown RBP6.91□□□□□ -1.3
CD44-233ENST00000531141 SPEM2Q0P670 501 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 NEUROD1Q13562 356 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 AAMPQ13685 434 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 ECM1Q16610 540 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 GPR152Q8TDT2 470 aa6.91□□□□□ -1.3
CD44-233ENST00000531141 FNDC3AQ9Y2H6 1198 aaKnown RBP6.91□□□□□ -1.3
CD44-233ENST00000531141 FZD6O60353 706 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 EGFRP00533 1210 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 CTBSQ01459 385 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 DNM1Q05193 864 aaKnown RBP6.9□□□□□ -1.3
CD44-233ENST00000531141 CCINQ13939 588 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 TRIP4Q15650 581 aaPredicted RBP6.9□□□□□ -1.3
CD44-233ENST00000531141 ZNF468Q5VIY5 522 aaPredicted RBP6.9□□□□□ -1.3
CD44-233ENST00000531141 NUDT16Q96DE0 195 aaKnown RBP6.9□□□□□ -1.3
CD44-233ENST00000531141 BRPF3Q9ULD4 1205 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 KCNMB2Q9Y691 235 aa6.9□□□□□ -1.3
CD44-233ENST00000531141 IGF1RP08069 1367 aa6.9□□□□□ -1.31
CD44-233ENST00000531141 XYLBO75191 536 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 ARAFP10398 606 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 GJD3Q8N144 294 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 CMTR1Q8N1G2 835 aaKnown RBP6.89□□□□□ -1.31
CD44-233ENST00000531141 CNTNAP3BQ96NU0 1288 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 PNMA5Q96PV4 448 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 SLC30A3Q99726 388 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 CNTNAP3Q9BZ76 1288 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 DCTN4Q9UJW0 460 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 POLIQ9UNA4 740 aa6.89□□□□□ -1.31
CD44-233ENST00000531141 UBAP1LF5GYI3 381 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 ADH6P28332 368 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 EHHADHQ08426 723 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 GRIN2CQ14957 1233 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 PDE12Q6L8Q7 609 aaKnown RBP6.88□□□□□ -1.31
CD44-233ENST00000531141 TTC16Q8NEE8 873 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 CITED4Q96RK1 184 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 GSX2Q9BZM3 304 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 GZF1Q9H116 711 aaPredicted RBP6.88□□□□□ -1.31
CD44-233ENST00000531141 CCDC87Q9NVE4 849 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 GDF2Q9UK05 429 aaPredicted RBP6.88□□□□□ -1.31
CD44-233ENST00000531141 PRR12Q9ULL5 1215 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 USP20Q9Y2K6 914 aa6.88□□□□□ -1.31
CD44-233ENST00000531141 C2CD2LO14523 706 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 ADAMTS2O95450 1211 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 SLURP2P0DP57 97 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 NFKB1P19838 968 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 PDE3BQ13370 1112 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 SLCO4C1Q6ZQN7 724 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 GOLGA6L1Q8N7Z2 621 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 OXCT2Q9BYC2 517 aaPredicted RBP6.87□□□□□ -1.31
CD44-233ENST00000531141 RBCK1Q9BYM8 510 aa6.87□□□□□ -1.31
CD44-233ENST00000531141 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.87□□□□□ -1.31
CD44-233ENST00000531141 SIN3BO75182 1162 aa6.86□□□□□ -1.31
CD44-233ENST00000531141 MAP3K6O95382 1288 aa6.86□□□□□ -1.31
CD44-233ENST00000531141 MAPK1P28482 360 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms