RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 ALKBH2Q6NS38 261 aa8.84□□□□□ -0.99
CD44-231ENST00000531110 TREML1Q86YW5 311 aa8.84□□□□□ -0.99
CD44-231ENST00000531110 HOMEZQ8IX15 550 aa8.84□□□□□ -0.99
CD44-231ENST00000531110 KCTD17Q8N5Z5 321 aa8.84□□□□□ -0.99
CD44-231ENST00000531110 SCNN1AP37088 669 aa8.83□□□□□ -1
CD44-231ENST00000531110 HCN2Q9UL51 889 aa8.83□□□□□ -1
CD44-231ENST00000531110 ICMTO60725 284 aa8.82□□□□□ -1
CD44-231ENST00000531110 EGFRP00533 1210 aa8.82□□□□□ -1
CD44-231ENST00000531110 ARAFP10398 606 aa8.82□□□□□ -1
CD44-231ENST00000531110 BMP4P12644 408 aa8.82□□□□□ -1
CD44-231ENST00000531110 CNTNAP3BQ96NU0 1288 aa8.82□□□□□ -1
CD44-231ENST00000531110 CNTNAP3Q9BZ76 1288 aa8.82□□□□□ -1
CD44-231ENST00000531110 IGF1RP08069 1367 aa8.82□□□□□ -1
CD44-231ENST00000531110 OPLAHO14841 1288 aa8.81□□□□□ -1
CD44-231ENST00000531110 RPLP1P05386 114 aaKnown RBP8.81□□□□□ -1
CD44-231ENST00000531110 CD33P20138 364 aa8.81□□□□□ -1
CD44-231ENST00000531110 ZAP70P43403 619 aa8.81□□□□□ -1
CD44-231ENST00000531110 CTBSQ01459 385 aa8.81□□□□□ -1
CD44-231ENST00000531110 NEUROD1Q13562 356 aa8.81□□□□□ -1
CD44-231ENST00000531110 NOM1Q5C9Z4 860 aaKnown RBP8.81□□□□□ -1
CD44-231ENST00000531110 ZNF468Q5VIY5 522 aaPredicted RBP8.81□□□□□ -1
CD44-231ENST00000531110 STRN4Q9NRL3 753 aa8.81□□□□□ -1
CD44-231ENST00000531110 GDF2Q9UK05 429 aaPredicted RBP8.81□□□□□ -1
CD44-231ENST00000531110 ADAMTS2O95450 1211 aa8.8□□□□□ -1
CD44-231ENST00000531110 INSM1Q01101 510 aaPredicted RBP8.8□□□□□ -1
CD44-231ENST00000531110 SFSWAPQ12872 951 aaKnown RBP8.8□□□□□ -1
CD44-231ENST00000531110 C2CD2LO14523 706 aa8.79□□□□□ -1
CD44-231ENST00000531110 ABL1P00519 1130 aa8.79□□□□□ -1
CD44-231ENST00000531110 SERPINB4P48594 390 aa8.79□□□□□ -1
CD44-231ENST00000531110 SPEM2Q0P670 501 aa8.79□□□□□ -1
CD44-231ENST00000531110 FAM26DQ5JW98 314 aa8.79□□□□□ -1
CD44-231ENST00000531110 GOLGA6L1Q8N7Z2 621 aa8.79□□□□□ -1
CD44-231ENST00000531110 PIK3R5Q8WYR1 880 aa8.79□□□□□ -1
CD44-231ENST00000531110 RTCBQ9Y3I0 505 aaKnown RBP8.79□□□□□ -1
CD44-231ENST00000531110 SIN3BO75182 1162 aa8.78□□□□□ -1
CD44-231ENST00000531110 MPSTP25325 297 aa8.78□□□□□ -1
CD44-231ENST00000531110 ADH6P28332 368 aa8.78□□□□□ -1
CD44-231ENST00000531110 GRNP28799 593 aaKnown RBP8.78□□□□□ -1
CD44-231ENST00000531110 EIF1AXP47813 144 aaKnown RBP8.78□□□□□ -1
CD44-231ENST00000531110 CCINQ13939 588 aa8.78□□□□□ -1
CD44-231ENST00000531110 SLCO4C1Q6ZQN7 724 aa8.78□□□□□ -1
CD44-231ENST00000531110 OXCT2Q9BYC2 517 aaPredicted RBP8.78□□□□□ -1
CD44-231ENST00000531110 GSX2Q9BZM3 304 aa8.78□□□□□ -1
CD44-231ENST00000531110 ZBTB39O15060 712 aa8.77□□□□□ -1.01
CD44-231ENST00000531110 ZNF211Q13398 564 aaPredicted RBP8.77□□□□□ -1.01
CD44-231ENST00000531110 GLYCTKQ8IVS8 523 aa8.77□□□□□ -1.01
CD44-231ENST00000531110 PRR12Q9ULL5 1215 aa8.77□□□□□ -1.01
CD44-231ENST00000531110 FNDC3AQ9Y2H6 1198 aaKnown RBP8.77□□□□□ -1.01
CD44-231ENST00000531110 SOWAHDA6NJG2 315 aa8.76□□□□□ -1.01
CD44-231ENST00000531110 H3BRB1 525 aa8.76□□□□□ -1.01
CD44-231ENST00000531110 MAP3K6O95382 1288 aa8.76□□□□□ -1.01
CD44-231ENST00000531110 MZF1P28698 734 aaPredicted RBP8.76□□□□□ -1.01
CD44-231ENST00000531110 USP5P45974 858 aa8.76□□□□□ -1.01
CD44-231ENST00000531110 TUT1Q9H6E5 874 aaKnown RBP8.76□□□□□ -1.01
CD44-231ENST00000531110 KCNMB2Q9Y691 235 aa8.76□□□□□ -1.01
CD44-231ENST00000531110 PCSK2P16519 638 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 MTMR3Q13615 1198 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 ECM1Q16610 540 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 RGL4Q8IZJ4 473 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 TNFRSF25Q93038 417 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 ACDQ96AP0 544 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 SLC30A3Q99726 388 aa8.75□□□□□ -1.01
CD44-231ENST00000531110 ADARB2-AS1A8MUL3 147 aa8.74□□□□□ -1.01
CD44-231ENST00000531110 LORP23490 312 aaPredicted RBP8.74□□□□□ -1.01
CD44-231ENST00000531110 ARHGAP4P98171 946 aa8.74□□□□□ -1.01
CD44-231ENST00000531110 CITED4Q96RK1 184 aa8.74□□□□□ -1.01
CD44-231ENST00000531110 MDFIQ99750 246 aa8.74□□□□□ -1.01
CD44-231ENST00000531110 IVNS1ABPQ9Y6Y0 642 aa8.74□□□□□ -1.01
CD44-231ENST00000531110 OIP5O43482 229 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 XYLBO75191 536 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 BCRP11274 1271 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 PDE12Q6L8Q7 609 aaKnown RBP8.73□□□□□ -1.01
CD44-231ENST00000531110 XKR5Q6UX68 686 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 SYT9Q86SS6 491 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 ZSCAN1Q8NBB4 408 aa8.73□□□□□ -1.01
CD44-231ENST00000531110 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.73□□□□□ -1.01
CD44-231ENST00000531110 FZD6O60353 706 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 PDGFAP04085 211 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 CELA2BP08218 269 aaPredicted RBP8.72□□□□□ -1.01
CD44-231ENST00000531110 HOXD8P13378 290 aaPredicted RBP8.72□□□□□ -1.01
CD44-231ENST00000531110 EHHADHQ08426 723 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 PCSK7Q16549 785 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 ZNF385CQ66K41 422 aaPredicted RBP8.72□□□□□ -1.01
CD44-231ENST00000531110 CMTR1Q8N1G2 835 aaKnown RBP8.72□□□□□ -1.01
CD44-231ENST00000531110 GPR152Q8TDT2 470 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 PNMA5Q96PV4 448 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 ANO2Q9NQ90 1003 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 KLF15Q9UIH9 416 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 GGA1Q9UJY5 639 aa8.72□□□□□ -1.01
CD44-231ENST00000531110 EPXP11678 715 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 SOX18P35713 384 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 MAP3K10Q02779 954 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 GRIN2CQ14957 1233 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 TRIP4Q15650 581 aaPredicted RBP8.71□□□□□ -1.02
CD44-231ENST00000531110 NLRP13Q86W25 1043 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 ATCAYQ86WG3 371 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 EDEM1Q92611 657 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 NUDT16Q96DE0 195 aaKnown RBP8.71□□□□□ -1.02
CD44-231ENST00000531110 ENAMQ9NRM1 1142 aa8.71□□□□□ -1.02
CD44-231ENST00000531110 UBAP1LF5GYI3 381 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms