RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 KLRG1Q96E93 195 aa20.65■□□□□ 0.9
CPSF1-205ENST00000531042 SNED1Q8TER0 1413 aa20.64■□□□□ 0.89
CPSF1-205ENST00000531042 LAS1LQ9Y4W2 734 aaKnown RBP20.64■□□□□ 0.89
CPSF1-205ENST00000531042 KRT24Q2M2I5 525 aa20.63■□□□□ 0.89
CPSF1-205ENST00000531042 COPS6Q7L5N1 327 aa20.63■□□□□ 0.89
CPSF1-205ENST00000531042 SYNE4Q8N205 404 aa20.63■□□□□ 0.89
CPSF1-205ENST00000531042 ANKRD36CQ5JPF3 1778 aa20.62■□□□□ 0.89
CPSF1-205ENST00000531042 IARSP41252 1262 aaKnown RBP20.62■□□□□ 0.89
CPSF1-205ENST00000531042 CC2D2BQ6DHV5 1058 aa20.62■□□□□ 0.89
CPSF1-205ENST00000531042 XAGE3Q8WTP9 111 aa20.62■□□□□ 0.89
CPSF1-205ENST00000531042 L3MBTL3Q96JM7 780 aaPredicted RBP20.62■□□□□ 0.89
CPSF1-205ENST00000531042 CRAMP1Q96RY5 1269 aa20.62■□□□□ 0.89
CPSF1-205ENST00000531042 PSMD1Q99460 953 aa20.62■□□□□ 0.89
CPSF1-205ENST00000531042 DDX21Q9NR30 783 aaKnown RBP eCLIP20.62■□□□□ 0.89
CPSF1-205ENST00000531042 AIMP1Q12904 312 aaKnown RBP20.61■□□□□ 0.89
CPSF1-205ENST00000531042 SLC10A5Q5PT55 438 aa20.61■□□□□ 0.89
CPSF1-205ENST00000531042 C3orf67Q6ZVT6 689 aa20.61■□□□□ 0.89
CPSF1-205ENST00000531042 RBM17Q96I25 401 aaKnown RBP20.61■□□□□ 0.89
CPSF1-205ENST00000531042 UTP14AQ9BVJ6 771 aaKnown RBP20.61■□□□□ 0.89
CPSF1-205ENST00000531042 SCN4AP35499 1836 aa20.61■□□□□ 0.89
CPSF1-205ENST00000531042 ZNF541Q9H0D2 1346 aa20.6■□□□□ 0.89
CPSF1-205ENST00000531042 IQCA1LA6NCM1 817 aa20.6■□□□□ 0.89
CPSF1-205ENST00000531042 HSP90AB3PQ58FF7 597 aa20.6■□□□□ 0.89
CPSF1-205ENST00000531042 JMYQ8N9B5 988 aa20.6■□□□□ 0.89
CPSF1-205ENST00000531042 NLRP3Q96P20 1036 aa20.6■□□□□ 0.89
CPSF1-205ENST00000531042 FZD9O00144 591 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 POTEIP0CG38 1075 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 POTEJP0CG39 1038 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 GRIPAP1Q4V328 841 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 IFFO2Q5TF58 517 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 CHADLQ6NUI6 762 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 CFAP44Q96MT7 982 aa20.59■□□□□ 0.89
CPSF1-205ENST00000531042 RNF123Q5XPI4 1314 aa20.58■□□□□ 0.89
CPSF1-205ENST00000531042 HOXB7P09629 217 aa20.58■□□□□ 0.89
CPSF1-205ENST00000531042 TCIRG1Q13488 830 aa20.58■□□□□ 0.89
CPSF1-205ENST00000531042 NLRP10Q86W26 655 aa20.58■□□□□ 0.89
CPSF1-205ENST00000531042 TAF1DQ9H5J8 278 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-205ENST00000531042 CHPF2Q9P2E5 772 aa20.58■□□□□ 0.89
CPSF1-205ENST00000531042 PPEF1O14829 653 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-205ENST00000531042 HDGFL1Q5TGJ6 251 aa20.57■□□□□ 0.88
CPSF1-205ENST00000531042 SLC51AQ86UW1 340 aa20.56■□□□□ 0.88
CPSF1-205ENST00000531042 JDP2Q8WYK2 163 aa20.56■□□□□ 0.88
CPSF1-205ENST00000531042 LAMB2P55268 1798 aa20.56■□□□□ 0.88
CPSF1-205ENST00000531042 COL4A5P29400 1685 aa20.55■□□□□ 0.88
CPSF1-205ENST00000531042 TCERG1O14776 1098 aaKnown RBP20.55■□□□□ 0.88
CPSF1-205ENST00000531042 LDHDQ86WU2 507 aa20.55■□□□□ 0.88
CPSF1-205ENST00000531042 MBIPQ9NS73 344 aa20.55■□□□□ 0.88
CPSF1-205ENST00000531042 DBF4Q9UBU7 674 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-205ENST00000531042 PCNTO95613 3336 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 APAF1O14727 1248 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 ZNF853P0CG23 659 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 GPC2Q8N158 579 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 PLBD2Q8NHP8 589 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 TRMT112Q9UI30 125 aaKnown RBP20.54■□□□□ 0.88
CPSF1-205ENST00000531042 HACL1Q9UJ83 578 aa20.54■□□□□ 0.88
CPSF1-205ENST00000531042 ABCC4O15439 1325 aa20.53■□□□□ 0.88
CPSF1-205ENST00000531042 HCLS1P14317 486 aaPredicted RBP20.53■□□□□ 0.88
CPSF1-205ENST00000531042 DUSP27Q5VZP5 1158 aa20.53■□□□□ 0.88
CPSF1-205ENST00000531042 ANKRD13DQ6ZTN6 518 aa20.53■□□□□ 0.88
CPSF1-205ENST00000531042 ATP6V0A2Q9Y487 856 aa20.53■□□□□ 0.88
CPSF1-205ENST00000531042 SH3TC1Q8TE82 1336 aa20.53■□□□□ 0.88
CPSF1-205ENST00000531042 EIF6P56537 245 aaKnown RBP20.52■□□□□ 0.88
CPSF1-205ENST00000531042 LARGE2Q8N3Y3 721 aa20.52■□□□□ 0.88
CPSF1-205ENST00000531042 TMX4Q9H1E5 349 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-205ENST00000531042 EPHX2P34913 555 aa20.51■□□□□ 0.87
CPSF1-205ENST00000531042 EAPPQ56P03 285 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-205ENST00000531042 IFT57Q9NWB7 429 aa20.51■□□□□ 0.87
CPSF1-205ENST00000531042 HYPKQ9NX55 129 aa20.51■□□□□ 0.87
CPSF1-205ENST00000531042 ADAMTSL1Q8N6G6 1762 aa20.51■□□□□ 0.87
CPSF1-205ENST00000531042 BBOX1O75936 387 aa20.5■□□□□ 0.87
CPSF1-205ENST00000531042 ISCA1Q9BUE6 129 aa20.5■□□□□ 0.87
CPSF1-205ENST00000531042 CREBZFQ9NS37 354 aa20.5■□□□□ 0.87
CPSF1-205ENST00000531042 PASKQ96RG2 1323 aa20.5■□□□□ 0.87
CPSF1-205ENST00000531042 GNAI1P63096 354 aa20.49■□□□□ 0.87
CPSF1-205ENST00000531042 CALD1Q05682 793 aaKnown RBP20.49■□□□□ 0.87
CPSF1-205ENST00000531042 DDX46Q7L014 1031 aaKnown RBP20.49■□□□□ 0.87
CPSF1-205ENST00000531042 PNMA8AQ86V59 439 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-205ENST00000531042 SP8Q8IXZ3 490 aa20.49■□□□□ 0.87
CPSF1-205ENST00000531042 ZNF428Q96B54 188 aa20.49■□□□□ 0.87
CPSF1-205ENST00000531042 VPS33BQ9H267 617 aa20.49■□□□□ 0.87
CPSF1-205ENST00000531042 GJA3Q9Y6H8 435 aa20.49■□□□□ 0.87
CPSF1-205ENST00000531042 DDX60Q8IY21 1712 aaKnown RBP20.49■□□□□ 0.87
CPSF1-205ENST00000531042 PPIP5K2O43314 1243 aa20.48■□□□□ 0.87
CPSF1-205ENST00000531042 ITGBL1O95965 494 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-205ENST00000531042 RTFDC1Q9BY42 306 aaPredicted RBP20.48■□□□□ 0.87
CPSF1-205ENST00000531042 CLEC11AQ9Y240 323 aa20.48■□□□□ 0.87
CPSF1-205ENST00000531042 TAF1P21675 1872 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 ATP5J2-PTCD1G3V325 749 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 GRAPQ13588 217 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 AOC3Q16853 763 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 NIM1KQ8IY84 436 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 SUPT20HQ8NEM7 779 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 GRAPLQ8TC17 118 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-205ENST00000531042 LTBP1Q14766 1721 aa20.47■□□□□ 0.87
CPSF1-205ENST00000531042 MPNDQ8N594 471 aa20.46■□□□□ 0.87
CPSF1-205ENST00000531042 FAM89AQ96GI7 184 aa20.46■□□□□ 0.87
CPSF1-205ENST00000531042 ELL2O00472 640 aaPredicted RBP20.45■□□□□ 0.86
CPSF1-205ENST00000531042 TRIM28Q13263 835 aaKnown RBP20.45■□□□□ 0.86
CPSF1-205ENST00000531042 DPP8Q6V1X1 898 aaPredicted RBP20.45■□□□□ 0.86
CPSF1-205ENST00000531042 LMOD1P29536 600 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms