RNA–Protein interactions for RNA: ENST00000528563.5

HIF3A-211, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2

Gene HIF3A, Length 1,486 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-211ENST00000528563 RIC3Q7Z5B4 369 aa21.65■■□□□ 1.06
HIF3A-211ENST00000528563 CNKSR1Q969H4 720 aa21.65■■□□□ 1.06
HIF3A-211ENST00000528563 ABCC12Q96J65 1359 aa21.65■■□□□ 1.06
HIF3A-211ENST00000528563 CRY2Q49AN0 593 aa21.64■■□□□ 1.06
HIF3A-211ENST00000528563 RNF123Q5XPI4 1314 aa21.63■■□□□ 1.05
HIF3A-211ENST00000528563 COL11A2P13942 1736 aaPredicted RBP21.63■■□□□ 1.05
HIF3A-211ENST00000528563 RIC1Q4ADV7 1423 aa21.63■■□□□ 1.05
HIF3A-211ENST00000528563 ATP5J2-PTCD1G3V325 749 aa21.63■■□□□ 1.05
HIF3A-211ENST00000528563 G2E3Q7L622 706 aa21.63■■□□□ 1.05
HIF3A-211ENST00000528563 SYNE4Q8N205 404 aa21.63■■□□□ 1.05
HIF3A-211ENST00000528563 TRMT112Q9UI30 125 aaKnown RBP21.63■■□□□ 1.05
HIF3A-211ENST00000528563 ANKRD36CQ5JPF3 1778 aa21.62■■□□□ 1.05
HIF3A-211ENST00000528563 E9PSI1 815 aa21.62■■□□□ 1.05
HIF3A-211ENST00000528563 DDX58O95786 925 aaKnown RBP21.62■■□□□ 1.05
HIF3A-211ENST00000528563 SLFN5Q08AF3 891 aa21.62■■□□□ 1.05
HIF3A-211ENST00000528563 KSR2Q6VAB6 950 aa21.62■■□□□ 1.05
HIF3A-211ENST00000528563 ZNF784Q8NCA9 323 aaPredicted RBP21.62■■□□□ 1.05
HIF3A-211ENST00000528563 HOXA10P31260 410 aaPredicted RBP21.61■■□□□ 1.05
HIF3A-211ENST00000528563 PRPF40BQ6NWY9 871 aaKnown RBP21.61■■□□□ 1.05
HIF3A-211ENST00000528563 C7orf43Q8WVR3 580 aa21.61■■□□□ 1.05
HIF3A-211ENST00000528563 PI4KAP2A4QPH2 592 aa21.6■■□□□ 1.05
HIF3A-211ENST00000528563 C21orf2O43822 256 aa21.6■■□□□ 1.05
HIF3A-211ENST00000528563 C3orf67Q6ZVT6 689 aa21.6■■□□□ 1.05
HIF3A-211ENST00000528563 PI4KAP1Q8N8J0 262 aa21.6■■□□□ 1.05
HIF3A-211ENST00000528563 METTL22Q9BUU2 404 aaPredicted RBP21.6■■□□□ 1.05
HIF3A-211ENST00000528563 SH3TC1Q8TE82 1336 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 ALDH1B1P30837 517 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 TRMT2AQ8IZ69 625 aaKnown RBP21.59■■□□□ 1.05
HIF3A-211ENST00000528563 CDCA7LQ96GN5 454 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 NLRP3Q96P20 1036 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 MAP3K2Q9Y2U5 619 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 SLX4Q8IY92 1834 aa21.59■■□□□ 1.05
HIF3A-211ENST00000528563 HCLS1P14317 486 aaPredicted RBP21.58■■□□□ 1.05
HIF3A-211ENST00000528563 ZNF428Q96B54 188 aa21.58■■□□□ 1.05
HIF3A-211ENST00000528563 MYD88Q99836 296 aa21.58■■□□□ 1.05
HIF3A-211ENST00000528563 TNRC6CQ9HCJ0 1690 aaKnown RBP21.58■■□□□ 1.05
HIF3A-211ENST00000528563 ADCY9O60503 1353 aa21.58■■□□□ 1.04
HIF3A-211ENST00000528563 ARFGEF2Q9Y6D5 1785 aa21.58■■□□□ 1.04
HIF3A-211ENST00000528563 FLIIQ13045 1269 aa21.58■■□□□ 1.04
HIF3A-211ENST00000528563 ZNF219Q9P2Y4 722 aaPredicted RBP21.58■■□□□ 1.04
HIF3A-211ENST00000528563 CCDC191Q8NCU4 936 aa21.57■■□□□ 1.04
HIF3A-211ENST00000528563 FAM89AQ96GI7 184 aa21.57■■□□□ 1.04
HIF3A-211ENST00000528563 CRAMP1Q96RY5 1269 aa21.57■■□□□ 1.04
HIF3A-211ENST00000528563 CACNA1FO60840 1977 aa21.56■■□□□ 1.04
HIF3A-211ENST00000528563 NFKBIEO00221 500 aa21.56■■□□□ 1.04
HIF3A-211ENST00000528563 C9orf131Q5VYM1 1079 aa21.56■■□□□ 1.04
HIF3A-211ENST00000528563 RPGRQ92834 1020 aaKnown RBP21.56■■□□□ 1.04
HIF3A-211ENST00000528563 RBM17Q96I25 401 aaKnown RBP21.55■■□□□ 1.04
HIF3A-211ENST00000528563 IGKV5-2P06315 115 aa21.54■■□□□ 1.04
HIF3A-211ENST00000528563 PRELPP51888 382 aa21.54■■□□□ 1.04
HIF3A-211ENST00000528563 RASSF7Q02833 373 aa21.54■■□□□ 1.04
HIF3A-211ENST00000528563 SOGA3Q5TF21 947 aa21.54■■□□□ 1.04
HIF3A-211ENST00000528563 ZBTB38Q8NAP3 1195 aaPredicted RBP21.54■■□□□ 1.04
HIF3A-211ENST00000528563 CWC25Q9NXE8 425 aaPredicted RBP21.53■■□□□ 1.04
HIF3A-211ENST00000528563 SBF1O95248 1867 aa21.53■■□□□ 1.04
HIF3A-211ENST00000528563 LMNB1P20700 586 aa21.52■■□□□ 1.04
HIF3A-211ENST00000528563 FKBP5Q13451 457 aaPredicted RBP21.52■■□□□ 1.04
HIF3A-211ENST00000528563 RTL5Q5HYW3 569 aaPredicted RBP21.52■■□□□ 1.04
HIF3A-211ENST00000528563 LTBP3Q9NS15 1303 aa21.52■■□□□ 1.04
HIF3A-211ENST00000528563 PCCAP05165 728 aaPredicted RBP21.52■■□□□ 1.03
HIF3A-211ENST00000528563 NEXNQ0ZGT2 675 aa21.52■■□□□ 1.03
HIF3A-211ENST00000528563 RNF181Q9P0P0 153 aa21.52■■□□□ 1.03
HIF3A-211ENST00000528563 IRS4O14654 1257 aaPredicted RBP21.51■■□□□ 1.03
HIF3A-211ENST00000528563 SF3B3Q15393 1217 aaKnown RBP21.51■■□□□ 1.03
HIF3A-211ENST00000528563 OLFM4Q6UX06 510 aa21.51■■□□□ 1.03
HIF3A-211ENST00000528563 DNAAF4Q8WXU2 420 aa21.51■■□□□ 1.03
HIF3A-211ENST00000528563 CACNA1SQ13698 1873 aa21.5■■□□□ 1.03
HIF3A-211ENST00000528563 FER1L6Q2WGJ9 1857 aa21.5■■□□□ 1.03
HIF3A-211ENST00000528563 NEURL1BA8MQ27 555 aa21.5■■□□□ 1.03
HIF3A-211ENST00000528563 CWF19L2Q2TBE0 894 aaKnown RBP21.5■■□□□ 1.03
HIF3A-211ENST00000528563 CCDC93Q567U6 631 aa21.5■■□□□ 1.03
HIF3A-211ENST00000528563 CC2D2BQ6DHV5 1058 aa21.49■■□□□ 1.03
HIF3A-211ENST00000528563 RTKN2Q8IZC4 609 aa21.49■■□□□ 1.03
HIF3A-211ENST00000528563 JARID2Q92833 1246 aaPredicted RBP21.49■■□□□ 1.03
HIF3A-211ENST00000528563 BBOX1O75936 387 aa21.48■■□□□ 1.03
HIF3A-211ENST00000528563 TAOK3Q9H2K8 898 aa21.48■■□□□ 1.03
HIF3A-211ENST00000528563 HSP90B1P14625 803 aaKnown RBP21.47■■□□□ 1.03
HIF3A-211ENST00000528563 DDX46Q7L014 1031 aaKnown RBP21.47■■□□□ 1.03
HIF3A-211ENST00000528563 MRPL50Q8N5N7 158 aaKnown RBP21.47■■□□□ 1.03
HIF3A-211ENST00000528563 LINS1Q8NG48 757 aa21.47■■□□□ 1.03
HIF3A-211ENST00000528563 LAMB2P55268 1798 aa21.47■■□□□ 1.03
HIF3A-211ENST00000528563 ABCC4O15439 1325 aa21.47■■□□□ 1.03
HIF3A-211ENST00000528563 DDX60Q8IY21 1712 aaKnown RBP21.47■■□□□ 1.03
HIF3A-211ENST00000528563 F6X3S4 739 aa21.46■■□□□ 1.03
HIF3A-211ENST00000528563 H7C1W4 665 aa21.46■■□□□ 1.03
HIF3A-211ENST00000528563 GCKRQ14397 625 aa21.46■■□□□ 1.03
HIF3A-211ENST00000528563 SSH1Q8WYL5 1049 aa21.46■■□□□ 1.03
HIF3A-211ENST00000528563 CDHR2Q9BYE9 1310 aa21.46■■□□□ 1.03
HIF3A-211ENST00000528563 PPEF1O14829 653 aaPredicted RBP21.45■■□□□ 1.03
HIF3A-211ENST00000528563 HNRNPUQ00839 825 aaKnown RBP eCLIP21.45■■□□□ 1.03
HIF3A-211ENST00000528563 FKBP4Q02790 459 aaKnown RBP eCLIP21.45■■□□□ 1.03
HIF3A-211ENST00000528563 GRIPAP1Q4V328 841 aa21.45■■□□□ 1.03
HIF3A-211ENST00000528563 SNED1Q8TER0 1413 aa21.45■■□□□ 1.03
HIF3A-211ENST00000528563 ATP6V0A2Q9Y487 856 aa21.45■■□□□ 1.03
HIF3A-211ENST00000528563 PDE8AO60658 829 aa21.45■■□□□ 1.02
HIF3A-211ENST00000528563 CT47B1P0C2W7 299 aaPredicted RBP21.45■■□□□ 1.02
HIF3A-211ENST00000528563 GRAPQ13588 217 aa21.45■■□□□ 1.02
HIF3A-211ENST00000528563 BEND3Q5T5X7 828 aa21.45■■□□□ 1.02
HIF3A-211ENST00000528563 GRAPLQ8TC17 118 aaPredicted RBP21.45■■□□□ 1.02
HIF3A-211ENST00000528563 ZNF526Q8TF50 670 aaPredicted RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms