RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SLC4A3P48751 1232 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 LMOD3Q0VAK6 560 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 MTHFSDQ2M296 383 aaKnown RBP9.68□□□□□ -0.86
CD44-228ENST00000528455 THSD4Q6ZMP0 1018 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 RDH13Q8NBN7 331 aa9.68□□□□□ -0.86
CD44-228ENST00000528455 GNAT3A8MTJ3 354 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 EXOC5O00471 708 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 AKAP4Q5JQC9 854 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 WWC1Q8IX03 1113 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 IL27Q8NEV9 243 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 ZCRB1Q8TBF4 217 aaKnown RBP9.67□□□□□ -0.86
CD44-228ENST00000528455 DDRGK1Q96HY6 314 aa9.67□□□□□ -0.86
CD44-228ENST00000528455 YTHDC1Q96MU7 727 aaKnown RBP9.67□□□□□ -0.86
CD44-228ENST00000528455 PARP4Q9UKK3 1724 aaKnown RBP9.67□□□□□ -0.86
CD44-228ENST00000528455 GCGRP47871 477 aa9.66□□□□□ -0.86
CD44-228ENST00000528455 CALD1Q05682 793 aaKnown RBP9.66□□□□□ -0.86
CD44-228ENST00000528455 EZH2Q15910 746 aaKnown RBP9.66□□□□□ -0.86
CD44-228ENST00000528455 IFNL2Q8IZJ0 200 aa9.66□□□□□ -0.86
CD44-228ENST00000528455 RTF1Q92541 710 aaKnown RBP9.66□□□□□ -0.86
CD44-228ENST00000528455 TSR3Q9UJK0 312 aaKnown RBP9.66□□□□□ -0.86
CD44-228ENST00000528455 HPS5Q9UPZ3 1129 aa9.66□□□□□ -0.86
CD44-228ENST00000528455 OVOS2A0A0G2JMS6 1433 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 DISP2A7MBM2 1401 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 IL16Q14005 1332 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 ZNF521Q96K83 1311 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 DLG5Q8TDM6 1919 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 HSP90AB1P08238 724 aaKnown RBP9.65□□□□□ -0.86
CD44-228ENST00000528455 C1orf141Q5JVX7 400 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 CAMKK2Q96RR4 588 aa9.65□□□□□ -0.86
CD44-228ENST00000528455 RRP7AQ9Y3A4 280 aaKnown RBP9.65□□□□□ -0.86
CD44-228ENST00000528455 SALL2Q9Y467 1007 aaPredicted RBP9.65□□□□□ -0.86
CD44-228ENST00000528455 PPP4CP60510 307 aa9.64□□□□□ -0.87
CD44-228ENST00000528455 TRMT2AQ8IZ69 625 aaKnown RBP9.64□□□□□ -0.87
CD44-228ENST00000528455 WBP1LQ9NX94 342 aa9.64□□□□□ -0.87
CD44-228ENST00000528455 TNS1Q9HBL0 1735 aaKnown RBP9.64□□□□□ -0.87
CD44-228ENST00000528455 CFHP08603 1231 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 PHKG2P15735 406 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 SLFN5Q08AF3 891 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 ZNF530Q6P9A1 599 aaPredicted RBP9.63□□□□□ -0.87
CD44-228ENST00000528455 MARCH10Q8NA82 808 aaPredicted RBP9.63□□□□□ -0.87
CD44-228ENST00000528455 IL17REQ8NFR9 667 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 NECTIN2Q92692 538 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 DCAF5Q96JK2 942 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 BABAM1Q9NWV8 329 aa9.63□□□□□ -0.87
CD44-228ENST00000528455 E9PSI1 815 aa9.62□□□□□ -0.87
CD44-228ENST00000528455 CYP27B1O15528 508 aa9.62□□□□□ -0.87
CD44-228ENST00000528455 TAF7Q15545 349 aaPredicted RBP9.62□□□□□ -0.87
CD44-228ENST00000528455 NBPF14Q5TI25 921 aa9.62□□□□□ -0.87
CD44-228ENST00000528455 LRRC37A3O60309 1634 aa9.62□□□□□ -0.87
CD44-228ENST00000528455 WNK3Q9BYP7 1800 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 PCDH11XQ9BZA7 1347 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 PCDH11YQ9BZA8 1340 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 SENP3-EIF4A1A0A087X0R7 540 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 ERVV-2B6SEH9 535 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 PLSCR1O15162 318 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 RNMTO43148 476 aaKnown RBP9.61□□□□□ -0.87
CD44-228ENST00000528455 ZNF853P0CG23 659 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 GNAI1P63096 354 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 R3HDM1Q15032 1099 aaKnown RBP9.61□□□□□ -0.87
CD44-228ENST00000528455 TMEM132AQ24JP5 1023 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 DDX54Q8TDD1 881 aaKnown RBP9.61□□□□□ -0.87
CD44-228ENST00000528455 SPIRE2Q8WWL2 714 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 RNF166Q96A37 237 aaPredicted RBP9.61□□□□□ -0.87
CD44-228ENST00000528455 TBC1D2Q9BYX2 928 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 LGR6Q9HBX8 967 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 BCL9O00512 1426 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 MAP3K5Q99683 1374 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 MEGF6O75095 1541 aa9.61□□□□□ -0.87
CD44-228ENST00000528455 PKD1L3Q7Z443 1732 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 CHL1O00533 1208 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 KDM4AO75164 1064 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 APLP1P51693 650 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 MPRIPQ6WCQ1 1025 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 MCM10Q7L590 875 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 NUTM1Q86Y26 1132 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 MYH16Q9H6N6 1097 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 IFT57Q9NWB7 429 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 CEMIPQ8WUJ3 1361 aa9.6□□□□□ -0.87
CD44-228ENST00000528455 SBF2Q86WG5 1849 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 TNS2Q63HR2 1409 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 CENPBP07199 599 aaPredicted RBP9.59□□□□□ -0.87
CD44-228ENST00000528455 PTPN5P54829 565 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 TEFQ10587 303 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 DCTN1Q14203 1278 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 KMT5BQ4FZB7 885 aa9.59□□□□□ -0.87
CD44-228ENST00000528455 ACTN4O43707 911 aaKnown RBP9.58□□□□□ -0.88
CD44-228ENST00000528455 MMRN1Q13201 1228 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 DIXDC1Q155Q3 683 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 DUSP27Q5VZP5 1158 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 PTF1AQ7RTS3 328 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 NFATC2IPQ8NCF5 419 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 VIRMAQ69YN4 1812 aaKnown RBP9.58□□□□□ -0.88
CD44-228ENST00000528455 SCN11AQ9UI33 1791 aa9.58□□□□□ -0.88
CD44-228ENST00000528455 KAT6BQ8WYB5 2073 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 CABP4P57796 275 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 USP46P62068 366 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 FUT2Q10981 343 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 SH3D19Q5HYK7 790 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 MYSM1Q5VVJ2 828 aa9.57□□□□□ -0.88
CD44-228ENST00000528455 ACSBG1Q96GR2 724 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms