RNA–Protein interactions for RNA: ENST00000527920.5

SSSCA1-205, Transcript of Sjogren syndrome/scleroderma autoantigen 1, human

TSL 3 BASIC

Gene SSSCA1, Length 806 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSSCA1-205	ENST00000527920	ZNF219	Q9P2Y4	722 aa	Predicted RBP	42.76	■■■■■ 4.44
SSSCA1-205	ENST00000527920	ANKRD13D	Q6ZTN6	518 aa		42.75	■■■■■ 4.43
SSSCA1-205	ENST00000527920	NLRP10	Q86W26	655 aa		42.75	■■■■■ 4.43
SSSCA1-205	ENST00000527920	ANKRD36C	Q5JPF3	1778 aa		42.75	■■■■■ 4.43
SSSCA1-205	ENST00000527920	FER1L6	Q2WGJ9	1857 aa		42.74	■■■■■ 4.43
SSSCA1-205	ENST00000527920	ELL2	O00472	640 aa	Predicted RBP	42.73	■■■■■ 4.43
SSSCA1-205	ENST00000527920	HOXA10	P31260	410 aa	Predicted RBP	42.73	■■■■■ 4.43
SSSCA1-205	ENST00000527920	SLC10A5	Q5PT55	438 aa		42.73	■■■■■ 4.43
SSSCA1-205	ENST00000527920	KIF3C	O14782	793 aa		42.72	■■■■■ 4.43
SSSCA1-205	ENST00000527920	TAOK3	Q9H2K8	898 aa		42.72	■■■■■ 4.43
SSSCA1-205	ENST00000527920	CCDC93	Q567U6	631 aa		42.71	■■■■■ 4.43
SSSCA1-205	ENST00000527920	KDM2B	Q8NHM5	1336 aa		42.71	■■■■■ 4.43
SSSCA1-205	ENST00000527920	TSR2	Q969E8	191 aa	Known RBP	42.7	■■■■■ 4.43
SSSCA1-205	ENST00000527920	CCDC30	Q5VVM6	783 aa		42.69	■■■■■ 4.42
SSSCA1-205	ENST00000527920	RPGR	Q92834	1020 aa	Known RBP	42.69	■■■■■ 4.42
SSSCA1-205	ENST00000527920	CACNA1S	Q13698	1873 aa		42.68	■■■■■ 4.42
SSSCA1-205	ENST00000527920	WDR63	Q8IWG1	891 aa		42.68	■■■■■ 4.42
SSSCA1-205	ENST00000527920	SENP3-EIF4A1	A0A087X0R7	540 aa		42.67	■■■■■ 4.42
SSSCA1-205	ENST00000527920	NLRP3	Q96P20	1036 aa		42.67	■■■■■ 4.42
SSSCA1-205	ENST00000527920	TSPYL6	Q8N831	410 aa		42.66	■■■■■ 4.42
SSSCA1-205	ENST00000527920	CRAMP1	Q96RY5	1269 aa		42.66	■■■■■ 4.42
SSSCA1-205	ENST00000527920	ISCA1	Q9BUE6	129 aa		42.66	■■■■■ 4.42
SSSCA1-205	ENST00000527920	FAM9B	Q8IZU0	186 aa		42.65	■■■■■ 4.42
SSSCA1-205	ENST00000527920	GOLGA2	Q08379	1002 aa		42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	TRIM28	Q13263	835 aa	Known RBP	42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	RTKN2	Q8IZC4	609 aa		42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	RBM17	Q96I25	401 aa	Known RBP	42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	NMRK2	Q9NPI5	230 aa		42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	TRMT112	Q9UI30	125 aa	Known RBP	42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	SH3TC1	Q8TE82	1336 aa		42.64	■■■■■ 4.42
SSSCA1-205	ENST00000527920	C3orf67	Q6ZVT6	689 aa		42.62	■■■■■ 4.41
SSSCA1-205	ENST00000527920	CC2D2B	Q6DHV5	1058 aa		42.61	■■■■■ 4.41
SSSCA1-205	ENST00000527920	PHAX	Q9H814	394 aa	Known RBP	42.61	■■■■■ 4.41
SSSCA1-205	ENST00000527920	TIAM2	Q8IVF5	1701 aa		42.6	■■■■■ 4.41
SSSCA1-205	ENST00000527920	FKBP4	Q02790	459 aa	Known RBP eCLIP	42.6	■■■■■ 4.41
SSSCA1-205	ENST00000527920	GLTPD2	A6NH11	291 aa		42.59	■■■■■ 4.41
SSSCA1-205	ENST00000527920	SNED1	Q8TER0	1413 aa		42.58	■■■■■ 4.41
SSSCA1-205	ENST00000527920	FANCI	Q9NVI1	1328 aa		42.58	■■■■■ 4.41
SSSCA1-205	ENST00000527920	TWISTNB	Q3B726	338 aa	Predicted RBP	42.58	■■■■■ 4.41
SSSCA1-205	ENST00000527920	RIC3	Q7Z5B4	369 aa		42.58	■■■■■ 4.41
SSSCA1-205	ENST00000527920	CCDC88A	Q3V6T2	1871 aa		42.57	■■■■■ 4.41
SSSCA1-205	ENST00000527920	GRIPAP1	Q4V328	841 aa		42.57	■■■■■ 4.41
SSSCA1-205	ENST00000527920	DICER1	Q9UPY3	1922 aa	Known RBP	42.57	■■■■■ 4.41
SSSCA1-205	ENST00000527920	TOMM70	O94826	608 aa		42.55	■■■■■ 4.4
SSSCA1-205	ENST00000527920	DDX58	O95786	925 aa	Known RBP	42.55	■■■■■ 4.4
SSSCA1-205	ENST00000527920	OLFM4	Q6UX06	510 aa		42.55	■■■■■ 4.4
SSSCA1-205	ENST00000527920	SALL2	Q9Y467	1007 aa	Predicted RBP	42.55	■■■■■ 4.4
SSSCA1-205	ENST00000527920	ATP5J2-PTCD1	G3V325	749 aa		42.54	■■■■■ 4.4
SSSCA1-205	ENST00000527920	HCLS1	P14317	486 aa	Predicted RBP	42.54	■■■■■ 4.4
SSSCA1-205	ENST00000527920	SYNE4	Q8N205	404 aa		42.54	■■■■■ 4.4
SSSCA1-205	ENST00000527920	STK31	Q9BXU1	1019 aa		42.54	■■■■■ 4.4
SSSCA1-205	ENST00000527920	PSMD1	Q99460	953 aa		42.53	■■■■■ 4.4
SSSCA1-205	ENST00000527920	DPY19L2	Q6NUT2	758 aa		42.52	■■■■■ 4.4
SSSCA1-205	ENST00000527920	PPEF1	O14829	653 aa	Predicted RBP	42.51	■■■■■ 4.4
SSSCA1-205	ENST00000527920	ABCC4	O15439	1325 aa		42.48	■■■■■ 4.39
SSSCA1-205	ENST00000527920	RRAGC	Q9HB90	399 aa		42.48	■■■■■ 4.39
SSSCA1-205	ENST00000527920	FAM89A	Q96GI7	184 aa		42.47	■■■■■ 4.39
SSSCA1-205	ENST00000527920	METTL22	Q9BUU2	404 aa	Predicted RBP	42.47	■■■■■ 4.39
SSSCA1-205	ENST00000527920	ZNF277	Q9NRM2	450 aa	Predicted RBP	42.47	■■■■■ 4.39
SSSCA1-205	ENST00000527920	BBOX1	O75936	387 aa		42.46	■■■■■ 4.39
SSSCA1-205	ENST00000527920	CCDC191	Q8NCU4	936 aa		42.46	■■■■■ 4.39
SSSCA1-205	ENST00000527920	RBM46	Q8TBY0	533 aa	Known RBP	42.46	■■■■■ 4.39
SSSCA1-205	ENST00000527920	LAMB2	P55268	1798 aa		42.46	■■■■■ 4.39
SSSCA1-205	ENST00000527920	C16orf71	Q8IYS4	520 aa	Predicted RBP	42.45	■■■■■ 4.39
SSSCA1-205	ENST00000527920	MYD88	Q99836	296 aa		42.45	■■■■■ 4.39
SSSCA1-205	ENST00000527920	MYH16	Q9H6N6	1097 aa		42.45	■■■■■ 4.39
SSSCA1-205	ENST00000527920	ATP6V0A2	Q9Y487	856 aa		42.45	■■■■■ 4.39
SSSCA1-205	ENST00000527920	VEGFA	P15692	232 aa	Predicted RBP	42.44	■■■■■ 4.38
SSSCA1-205	ENST00000527920	KSR2	Q6VAB6	950 aa		42.44	■■■■■ 4.38
SSSCA1-205	ENST00000527920	DDX46	Q7L014	1031 aa	Known RBP	42.44	■■■■■ 4.38
SSSCA1-205	ENST00000527920	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	42.44	■■■■■ 4.38
SSSCA1-205	ENST00000527920	IARS	P41252	1262 aa	Known RBP	42.43	■■■■■ 4.38
SSSCA1-205	ENST00000527920	SF3B3	Q15393	1217 aa	Known RBP	42.43	■■■■■ 4.38
SSSCA1-205	ENST00000527920	HSP90B1	P14625	803 aa	Known RBP	42.42	■■■■■ 4.38
SSSCA1-205	ENST00000527920	TMX4	Q9H1E5	349 aa	Predicted RBP	42.42	■■■■■ 4.38
SSSCA1-205	ENST00000527920	SPINK5	Q9NQ38	1064 aa	Predicted RBP	42.42	■■■■■ 4.38
SSSCA1-205	ENST00000527920	DDX60	Q8IY21	1712 aa	Known RBP	42.42	■■■■■ 4.38
SSSCA1-205	ENST00000527920	ZNF521	Q96K83	1311 aa		42.42	■■■■■ 4.38
SSSCA1-205	ENST00000527920	WDR90	Q96KV7	1748 aa		42.41	■■■■■ 4.38
SSSCA1-205	ENST00000527920	VAMP4	O75379	141 aa		42.41	■■■■■ 4.38
SSSCA1-205	ENST00000527920	SLC4A2	P04920	1241 aa		42.41	■■■■■ 4.38
SSSCA1-205	ENST00000527920	MAP3K2	Q9Y2U5	619 aa		42.41	■■■■■ 4.38
SSSCA1-205	ENST00000527920	PI4KAP2	A4QPH2	592 aa		42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	HSPA6	P17066	643 aa		42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	EXOSC9	Q06265	439 aa	Known RBP	42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	GRAP	Q13588	217 aa		42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	PI4KAP1	Q8N8J0	262 aa		42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	GRAPL	Q8TC17	118 aa	Predicted RBP	42.4	■■■■■ 4.38
SSSCA1-205	ENST00000527920	IRS4	O14654	1257 aa	Predicted RBP	42.39	■■■■■ 4.38
SSSCA1-205	ENST00000527920	TMC4	Q7Z404	712 aa		42.39	■■■■■ 4.38
SSSCA1-205	ENST00000527920	ZNF428	Q96B54	188 aa		42.39	■■■■■ 4.38
SSSCA1-205	ENST00000527920	CWC25	Q9NXE8	425 aa	Predicted RBP	42.39	■■■■■ 4.38
SSSCA1-205	ENST00000527920	TCERG1	O14776	1098 aa	Known RBP	42.38	■■■■■ 4.37
SSSCA1-205	ENST00000527920	PCCA	P05165	728 aa	Predicted RBP	42.38	■■■■■ 4.37
SSSCA1-205	ENST00000527920	SP8	Q8IXZ3	490 aa		42.37	■■■■■ 4.37
SSSCA1-205	ENST00000527920	CCER2	I3L3R5	266 aa		42.36	■■■■■ 4.37
SSSCA1-205	ENST00000527920	FSTL1	Q12841	308 aa		42.36	■■■■■ 4.37
SSSCA1-205	ENST00000527920	POTEC	B2RU33	542 aa		42.34	■■■■■ 4.37
SSSCA1-205	ENST00000527920	NEXN	Q0ZGT2	675 aa		42.34	■■■■■ 4.37
SSSCA1-205	ENST00000527920	FLII	Q13045	1269 aa		42.34	■■■■■ 4.37

Retrieved 100 of 20,778 RNA–protein pairs in 263 ms