RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 CCDC93Q567U6 631 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 SLC10A5Q5PT55 438 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 NLRP10Q86W26 655 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 C8orf58Q8NAV2 365 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 ZNF428Q96B54 188 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 UTP14AQ9BVJ6 771 aaKnown RBP13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 TIAM2Q8IVF5 1701 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 DICER1Q9UPY3 1922 aaKnown RBP13.58□□□□□ -0.23
PRPF40B-204ENST00000527253 SNED1Q8TER0 1413 aa13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 ELL2O00472 640 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 ALDH1B1P30837 517 aa13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 GNAI1P63096 354 aa13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 SOGA3Q5TF21 947 aa13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 PPP1R42Q7Z4L9 355 aa13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 RBM46Q8TBY0 533 aaKnown RBP13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 ZNF277Q9NRM2 450 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 DBF4Q9UBU7 674 aaPredicted RBP13.58□□□□□ -0.24
PRPF40B-204ENST00000527253 FKBP4Q02790 459 aaKnown RBP eCLIP13.57□□□□□ -0.24
PRPF40B-204ENST00000527253 PLBD2Q8NHP8 589 aa13.57□□□□□ -0.24
PRPF40B-204ENST00000527253 HCLS1P14317 486 aaPredicted RBP13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 HSP90AB3PQ58FF7 597 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 ANKRD13DQ6ZTN6 518 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 TSPYL6Q8N831 410 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 RPGRQ92834 1020 aaKnown RBP13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 CRAMP1Q96RY5 1269 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 ISCA1Q9BUE6 129 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 MRS2Q9HD23 443 aa13.56□□□□□ -0.24
PRPF40B-204ENST00000527253 ATP5J2-PTCD1G3V325 749 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 ANP32CO43423 234 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 DDNO94850 711 aaPredicted RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 VEGFAP15692 232 aaPredicted RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 CALD1Q05682 793 aaKnown RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 WWC1Q8IX03 1113 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 RTKN2Q8IZC4 609 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 TSR2Q969E8 191 aaKnown RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 RBM17Q96I25 401 aaKnown RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 NLRP3Q96P20 1036 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 PHAXQ9H814 394 aaKnown RBP13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 HYPKQ9NX55 129 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 ANKRD36CQ5JPF3 1778 aa13.55□□□□□ -0.24
PRPF40B-204ENST00000527253 CEP350Q5VT06 3117 aa13.54□□□□□ -0.24
PRPF40B-204ENST00000527253 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
PRPF40B-204ENST00000527253 CCDC27Q2M243 656 aa13.54□□□□□ -0.24
PRPF40B-204ENST00000527253 DPY19L2Q6NUT2 758 aa13.54□□□□□ -0.24
PRPF40B-204ENST00000527253 TRMT112Q9UI30 125 aaKnown RBP13.54□□□□□ -0.24
PRPF40B-204ENST00000527253 WDR90Q96KV7 1748 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 PPEF1O14829 653 aaPredicted RBP13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 FSTL1Q12841 308 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 PSMD1Q99460 953 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 ABCC4O15439 1325 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 RNF123Q5XPI4 1314 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 SH3TC1Q8TE82 1336 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 ZNF541Q9H0D2 1346 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 COL4A5P29400 1685 aa13.53□□□□□ -0.24
PRPF40B-204ENST00000527253 IARSP41252 1262 aaKnown RBP13.52□□□□□ -0.25
PRPF40B-204ENST00000527253 APLP1P51693 650 aa13.52□□□□□ -0.25
PRPF40B-204ENST00000527253 HTRA3P83110 453 aa13.52□□□□□ -0.25
PRPF40B-204ENST00000527253 DNAJC5GQ8N7S2 189 aa13.52□□□□□ -0.25
PRPF40B-204ENST00000527253 LAMB2P55268 1798 aa13.52□□□□□ -0.25
PRPF40B-204ENST00000527253 FZD9O00144 591 aa13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 TRIM28Q13263 835 aaKnown RBP13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 CC2D2BQ6DHV5 1058 aa13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 SMC1BQ8NDV3 1235 aa13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 FAM89AQ96GI7 184 aa13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 ATP6V0A2Q9Y487 856 aa13.51□□□□□ -0.25
PRPF40B-204ENST00000527253 POTEIP0CG38 1075 aa13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 POTEJP0CG39 1038 aa13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 NCBP3Q53F19 620 aaKnown RBP13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 RIC3Q7Z5B4 369 aa13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 L3MBTL3Q96JM7 780 aaPredicted RBP13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 SALL2Q9Y467 1007 aaPredicted RBP13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 TAF1P21675 1872 aa13.5□□□□□ -0.25
PRPF40B-204ENST00000527253 RTL5Q5HYW3 569 aaPredicted RBP13.49□□□□□ -0.25
PRPF40B-204ENST00000527253 MYD88Q99836 296 aa13.49□□□□□ -0.25
PRPF40B-204ENST00000527253 DDX60Q8IY21 1712 aaKnown RBP13.49□□□□□ -0.25
PRPF40B-204ENST00000527253 COL4A1P02462 1669 aa13.49□□□□□ -0.25
PRPF40B-204ENST00000527253 IL16Q14005 1332 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 BBOX1O75936 387 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 GOLGA2Q08379 1002 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 GRAPQ13588 217 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 SF3B3Q15393 1217 aaKnown RBP13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 CCDC30Q5VVM6 783 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 G2E3Q7L622 706 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 SP8Q8IXZ3 490 aa13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 GRAPLQ8TC17 118 aaPredicted RBP13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 JARID2Q92833 1246 aaPredicted RBP13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
PRPF40B-204ENST00000527253 IRS4O14654 1257 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 GRIPAP1Q4V328 841 aa13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 DDX46Q7L014 1031 aaKnown RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 CELF1Q92879 486 aaKnown RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 METTL22Q9BUU2 404 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 RTFDC1Q9BY42 306 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 TAF1DQ9H5J8 278 aaPredicted RBP13.47□□□□□ -0.25
PRPF40B-204ENST00000527253 FANCIQ9NVI1 1328 aa13.46□□□□□ -0.25
PRPF40B-204ENST00000527253 AOC3Q16853 763 aa13.46□□□□□ -0.25
PRPF40B-204ENST00000527253 TWISTNBQ3B726 338 aaPredicted RBP13.46□□□□□ -0.25
PRPF40B-204ENST00000527253 FAM9BQ8IZU0 186 aa13.46□□□□□ -0.25
PRPF40B-204ENST00000527253 LARGE2Q8N3Y3 721 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms