RNA–Protein interactions for RNA: ENST00000525141.1

SMCO4-202, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMCO4, Length 889 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-202ENST00000525141 HOXA10P31260 410 aaPredicted RBP16.35■□□□□ 0.21
SMCO4-202ENST00000525141 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
SMCO4-202ENST00000525141 CHPF2Q9P2E5 772 aa16.35■□□□□ 0.21
SMCO4-202ENST00000525141 ZC3H4Q9UPT8 1303 aaKnown RBP16.35■□□□□ 0.21
SMCO4-202ENST00000525141 CACNA1SQ13698 1873 aa16.35■□□□□ 0.21
SMCO4-202ENST00000525141 ALDH1B1P30837 517 aa16.34■□□□□ 0.21
SMCO4-202ENST00000525141 TCIRG1Q13488 830 aa16.34■□□□□ 0.21
SMCO4-202ENST00000525141 DUSP27Q5VZP5 1158 aa16.34■□□□□ 0.21
SMCO4-202ENST00000525141 RBM46Q8TBY0 533 aaKnown RBP16.34■□□□□ 0.21
SMCO4-202ENST00000525141 TAOK3Q9H2K8 898 aa16.34■□□□□ 0.21
SMCO4-202ENST00000525141 DICER1Q9UPY3 1922 aaKnown RBP16.33■□□□□ 0.21
SMCO4-202ENST00000525141 TNRC6CQ9HCJ0 1690 aaKnown RBP16.33■□□□□ 0.2
SMCO4-202ENST00000525141 ARFGEF2Q9Y6D5 1785 aa16.33■□□□□ 0.2
SMCO4-202ENST00000525141 HOXB7P09629 217 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 PARP10Q53GL7 1025 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 SOGA3Q5TF21 947 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
SMCO4-202ENST00000525141 PPP1R42Q7Z4L9 355 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 NLRP10Q86W26 655 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 DNAJC5GQ8N7S2 189 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 C8orf58Q8NAV2 365 aa16.32■□□□□ 0.2
SMCO4-202ENST00000525141 UTP14AQ9BVJ6 771 aaKnown RBP16.32■□□□□ 0.2
SMCO4-202ENST00000525141 SNED1Q8TER0 1413 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 IBTKQ9P2D0 1353 aaPredicted RBP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 ELL2O00472 640 aaPredicted RBP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 DDNO94850 711 aaPredicted RBP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 VEGFAP15692 232 aaPredicted RBP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 FKBP4Q02790 459 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 CCDC93Q567U6 631 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 HDGFL1Q5TGJ6 251 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 ZNF428Q96B54 188 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 CRAMP1Q96RY5 1269 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 ZNF277Q9NRM2 450 aaPredicted RBP16.31■□□□□ 0.2
SMCO4-202ENST00000525141 IFT57Q9NWB7 429 aa16.31■□□□□ 0.2
SMCO4-202ENST00000525141 ANKRD13DQ6ZTN6 518 aa16.3■□□□□ 0.2
SMCO4-202ENST00000525141 RTKN2Q8IZC4 609 aa16.3■□□□□ 0.2
SMCO4-202ENST00000525141 DBF4Q9UBU7 674 aaPredicted RBP16.3■□□□□ 0.2
SMCO4-202ENST00000525141 RIC1Q4ADV7 1423 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 GNAI1P63096 354 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 DPY19L2Q6NUT2 758 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 TSPYL6Q8N831 410 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 PLBD2Q8NHP8 589 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 NLRP3Q96P20 1036 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 ISCA1Q9BUE6 129 aa16.29■□□□□ 0.2
SMCO4-202ENST00000525141 PHAXQ9H814 394 aaKnown RBP16.29■□□□□ 0.2
SMCO4-202ENST00000525141 CCER2I3L3R5 266 aa16.28■□□□□ 0.2
SMCO4-202ENST00000525141 HCLS1P14317 486 aaPredicted RBP16.28■□□□□ 0.2
SMCO4-202ENST00000525141 HTRA3P83110 453 aa16.28■□□□□ 0.2
SMCO4-202ENST00000525141 FSTL1Q12841 308 aa16.28■□□□□ 0.2
SMCO4-202ENST00000525141 C16orf71Q8IYS4 520 aaPredicted RBP16.28■□□□□ 0.2
SMCO4-202ENST00000525141 RBM17Q96I25 401 aaKnown RBP16.28■□□□□ 0.2
SMCO4-202ENST00000525141 TCERG1O14776 1098 aaKnown RBP16.27■□□□□ 0.2
SMCO4-202ENST00000525141 HSP90AB3PQ58FF7 597 aa16.27■□□□□ 0.2
SMCO4-202ENST00000525141 RPGRQ92834 1020 aaKnown RBP16.27■□□□□ 0.2
SMCO4-202ENST00000525141 HYPKQ9NX55 129 aa16.27■□□□□ 0.2
SMCO4-202ENST00000525141 TIAM2Q8IVF5 1701 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 ATP5J2-PTCD1G3V325 749 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 APLP1P51693 650 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 CCDC27Q2M243 656 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 WWC1Q8IX03 1113 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 PSMD1Q99460 953 aa16.26■□□□□ 0.19
SMCO4-202ENST00000525141 TRMT112Q9UI30 125 aaKnown RBP16.26■□□□□ 0.19
SMCO4-202ENST00000525141 WDR90Q96KV7 1748 aa16.25■□□□□ 0.19
SMCO4-202ENST00000525141 FZD9O00144 591 aa16.25■□□□□ 0.19
SMCO4-202ENST00000525141 POTEIP0CG38 1075 aa16.25■□□□□ 0.19
SMCO4-202ENST00000525141 POTEJP0CG39 1038 aa16.25■□□□□ 0.19
SMCO4-202ENST00000525141 IARSP41252 1262 aaKnown RBP16.25■□□□□ 0.19
SMCO4-202ENST00000525141 TRIM28Q13263 835 aaKnown RBP16.25■□□□□ 0.19
SMCO4-202ENST00000525141 CC2D2BQ6DHV5 1058 aa16.25■□□□□ 0.19
SMCO4-202ENST00000525141 ZNF541Q9H0D2 1346 aa16.24■□□□□ 0.19
SMCO4-202ENST00000525141 CALD1Q05682 793 aaKnown RBP16.24■□□□□ 0.19
SMCO4-202ENST00000525141 SMC1BQ8NDV3 1235 aa16.24■□□□□ 0.19
SMCO4-202ENST00000525141 TSR2Q969E8 191 aaKnown RBP16.24■□□□□ 0.19
SMCO4-202ENST00000525141 FAM89AQ96GI7 184 aa16.24■□□□□ 0.19
SMCO4-202ENST00000525141 COL4A5P29400 1685 aa16.24■□□□□ 0.19
SMCO4-202ENST00000525141 ABCC4O15439 1325 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 RNF123Q5XPI4 1314 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 SH3TC1Q8TE82 1336 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 TAF1P21675 1872 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 PPEF1O14829 653 aaPredicted RBP16.23■□□□□ 0.19
SMCO4-202ENST00000525141 FAM9BQ8IZU0 186 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 L3MBTL3Q96JM7 780 aaPredicted RBP16.23■□□□□ 0.19
SMCO4-202ENST00000525141 ATP6V0A2Q9Y487 856 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 ANKRD36CQ5JPF3 1778 aa16.23■□□□□ 0.19
SMCO4-202ENST00000525141 BBOX1O75936 387 aa16.22■□□□□ 0.19
SMCO4-202ENST00000525141 KCNA4P22459 653 aa16.22■□□□□ 0.19
SMCO4-202ENST00000525141 SP8Q8IXZ3 490 aa16.22■□□□□ 0.19
SMCO4-202ENST00000525141 LAMB2P55268 1798 aa16.21■□□□□ 0.19
SMCO4-202ENST00000525141 SF3B3Q15393 1217 aaKnown RBP16.21■□□□□ 0.19
SMCO4-202ENST00000525141 GRIPAP1Q4V328 841 aa16.2■□□□□ 0.18
SMCO4-202ENST00000525141 RTL5Q5HYW3 569 aaPredicted RBP16.2■□□□□ 0.18
SMCO4-202ENST00000525141 RIC3Q7Z5B4 369 aa16.2■□□□□ 0.18
SMCO4-202ENST00000525141 MIER1Q8N108 512 aa16.2■□□□□ 0.18
SMCO4-202ENST00000525141 JARID2Q92833 1246 aaPredicted RBP16.2■□□□□ 0.18
SMCO4-202ENST00000525141 RTFDC1Q9BY42 306 aaPredicted RBP16.2■□□□□ 0.18
SMCO4-202ENST00000525141 TAF1DQ9H5J8 278 aaPredicted RBP16.2■□□□□ 0.18
SMCO4-202ENST00000525141 SALL2Q9Y467 1007 aaPredicted RBP16.2■□□□□ 0.18
SMCO4-202ENST00000525141 GRAPQ13588 217 aa16.19■□□□□ 0.18
SMCO4-202ENST00000525141 CCDC30Q5VVM6 783 aa16.19■□□□□ 0.18
SMCO4-202ENST00000525141 G2E3Q7L622 706 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms