RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 NLRP10Q86W26 655 aa19.2■□□□□ 0.66
HMGCLL1-209ENST00000515546 SNED1Q8TER0 1413 aa19.19■□□□□ 0.66
HMGCLL1-209ENST00000515546 HOXA10P31260 410 aaPredicted RBP19.19■□□□□ 0.66
HMGCLL1-209ENST00000515546 SOGA3Q5TF21 947 aa19.19■□□□□ 0.66
HMGCLL1-209ENST00000515546 ZNF526Q8TF50 670 aaPredicted RBP19.19■□□□□ 0.66
HMGCLL1-209ENST00000515546 UTP14AQ9BVJ6 771 aaKnown RBP19.19■□□□□ 0.66
HMGCLL1-209ENST00000515546 ELL2O00472 640 aaPredicted RBP19.18■□□□□ 0.66
HMGCLL1-209ENST00000515546 C1QTNF8P60827 252 aa19.18■□□□□ 0.66
HMGCLL1-209ENST00000515546 SLC10A5Q5PT55 438 aa19.18■□□□□ 0.66
HMGCLL1-209ENST00000515546 TSPYL6Q8N831 410 aa19.18■□□□□ 0.66
HMGCLL1-209ENST00000515546 ANKRD13DQ6ZTN6 518 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 C3orf67Q6ZVT6 689 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 WDR63Q8IWG1 891 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 ISCA1Q9BUE6 129 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 CHMP4AQ9BY43 222 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 ZNF219Q9P2Y4 722 aaPredicted RBP19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 FANCIQ9NVI1 1328 aa19.17■□□□□ 0.66
HMGCLL1-209ENST00000515546 ALDH1B1P30837 517 aa19.16■□□□□ 0.66
HMGCLL1-209ENST00000515546 CCDC30Q5VVM6 783 aa19.16■□□□□ 0.66
HMGCLL1-209ENST00000515546 FAM9BQ8IZU0 186 aa19.16■□□□□ 0.66
HMGCLL1-209ENST00000515546 TAOK3Q9H2K8 898 aa19.16■□□□□ 0.66
HMGCLL1-209ENST00000515546 KIF3CO14782 793 aa19.15■□□□□ 0.66
HMGCLL1-209ENST00000515546 CCDC93Q567U6 631 aa19.15■□□□□ 0.66
HMGCLL1-209ENST00000515546 PHAXQ9H814 394 aaKnown RBP19.15■□□□□ 0.66
HMGCLL1-209ENST00000515546 LAMB2P55268 1798 aa19.14■□□□□ 0.66
HMGCLL1-209ENST00000515546 GOLGA2Q08379 1002 aa19.14■□□□□ 0.65
HMGCLL1-209ENST00000515546 TRIM28Q13263 835 aaKnown RBP19.14■□□□□ 0.65
HMGCLL1-209ENST00000515546 RPGRQ92834 1020 aaKnown RBP19.14■□□□□ 0.65
HMGCLL1-209ENST00000515546 DICER1Q9UPY3 1922 aaKnown RBP19.13■□□□□ 0.65
HMGCLL1-209ENST00000515546 TWISTNBQ3B726 338 aaPredicted RBP19.13■□□□□ 0.65
HMGCLL1-209ENST00000515546 CRAMP1Q96RY5 1269 aa19.13■□□□□ 0.65
HMGCLL1-209ENST00000515546 SH3TC1Q8TE82 1336 aa19.13■□□□□ 0.65
HMGCLL1-209ENST00000515546 DDX60Q8IY21 1712 aaKnown RBP19.13■□□□□ 0.65
HMGCLL1-209ENST00000515546 KDM2BQ8NHM5 1336 aa19.12■□□□□ 0.65
HMGCLL1-209ENST00000515546 ZNF521Q96K83 1311 aa19.12■□□□□ 0.65
HMGCLL1-209ENST00000515546 NLRP3Q96P20 1036 aa19.12■□□□□ 0.65
HMGCLL1-209ENST00000515546 NMRK2Q9NPI5 230 aa19.12■□□□□ 0.65
HMGCLL1-209ENST00000515546 TRMT112Q9UI30 125 aaKnown RBP19.12■□□□□ 0.65
HMGCLL1-209ENST00000515546 CCDC88AQ3V6T2 1871 aa19.11■□□□□ 0.65
HMGCLL1-209ENST00000515546 OLFM4Q6UX06 510 aa19.11■□□□□ 0.65
HMGCLL1-209ENST00000515546 SYNE4Q8N205 404 aa19.11■□□□□ 0.65
HMGCLL1-209ENST00000515546 RBM17Q96I25 401 aaKnown RBP19.11■□□□□ 0.65
HMGCLL1-209ENST00000515546 SALL2Q9Y467 1007 aaPredicted RBP19.11■□□□□ 0.65
HMGCLL1-209ENST00000515546 ATP5J2-PTCD1G3V325 749 aa19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 HCLS1P14317 486 aaPredicted RBP19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 FKBP4Q02790 459 aaKnown RBP eCLIP19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 RIC3Q7Z5B4 369 aa19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 RTKN2Q8IZC4 609 aa19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 SPINK5Q9NQ38 1064 aaPredicted RBP19.1■□□□□ 0.65
HMGCLL1-209ENST00000515546 CC2D2BQ6DHV5 1058 aa19.09■□□□□ 0.65
HMGCLL1-209ENST00000515546 STK31Q9BXU1 1019 aa19.09■□□□□ 0.65
HMGCLL1-209ENST00000515546 ABCC4O15439 1325 aa19.08■□□□□ 0.65
HMGCLL1-209ENST00000515546 GLTPD2A6NH11 291 aa19.08■□□□□ 0.64
HMGCLL1-209ENST00000515546 PPEF1O14829 653 aaPredicted RBP19.08■□□□□ 0.64
HMGCLL1-209ENST00000515546 DDX58O95786 925 aaKnown RBP19.08■□□□□ 0.64
HMGCLL1-209ENST00000515546 PSMD1Q99460 953 aa19.08■□□□□ 0.64
HMGCLL1-209ENST00000515546 CCER2I3L3R5 266 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 GRIPAP1Q4V328 841 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 SLC51AQ86UW1 340 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 FAM89AQ96GI7 184 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 METTL22Q9BUU2 404 aaPredicted RBP19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 MYH16Q9H6N6 1097 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 WDR90Q96KV7 1748 aa19.07■□□□□ 0.64
HMGCLL1-209ENST00000515546 VAMP4O75379 141 aa19.06■□□□□ 0.64
HMGCLL1-209ENST00000515546 EXOSC9Q06265 439 aaKnown RBP19.06■□□□□ 0.64
HMGCLL1-209ENST00000515546 KSR2Q6VAB6 950 aa19.06■□□□□ 0.64
HMGCLL1-209ENST00000515546 CCDC191Q8NCU4 936 aa19.06■□□□□ 0.64
HMGCLL1-209ENST00000515546 MYD88Q99836 296 aa19.06■□□□□ 0.64
HMGCLL1-209ENST00000515546 LRRC37AA6NMS7 1700 aa19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 TCERG1O14776 1098 aaKnown RBP19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 G2E3Q7L622 706 aa19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 ZBTB38Q8NAP3 1195 aaPredicted RBP19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 ZNF428Q96B54 188 aa19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 ZNF277Q9NRM2 450 aaPredicted RBP19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 MAP3K2Q9Y2U5 619 aa19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 ATP6V0A2Q9Y487 856 aa19.05■□□□□ 0.64
HMGCLL1-209ENST00000515546 PI4KAP2A4QPH2 592 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 TOMM70O94826 608 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 SLC4A2P04920 1241 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 SF3B3Q15393 1217 aaKnown RBP19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 PI4KAP1Q8N8J0 262 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 COL4A5P29400 1685 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 CEP350Q5VT06 3117 aa19.04■□□□□ 0.64
HMGCLL1-209ENST00000515546 BBOX1O75936 387 aa19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 IARSP41252 1262 aaKnown RBP19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 GRAPQ13588 217 aa19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 DDX46Q7L014 1031 aaKnown RBP19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 GRAPLQ8TC17 118 aaPredicted RBP19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 CWC25Q9NXE8 425 aaPredicted RBP19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 COL4A1P02462 1669 aa19.03■□□□□ 0.64
HMGCLL1-209ENST00000515546 IRS4O14654 1257 aaPredicted RBP19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 PCCAP05165 728 aaPredicted RBP19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 IGKV5-2P06315 115 aa19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 FLIIQ13045 1269 aa19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 RBM46Q8TBY0 533 aaKnown RBP19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 RRAGCQ9HB90 399 aa19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 CACNA1FO60840 1977 aa19.02■□□□□ 0.64
HMGCLL1-209ENST00000515546 DUOX1Q9NRD9 1551 aa19.02■□□□□ 0.63
HMGCLL1-209ENST00000515546 POTECB2RU33 542 aa19■□□□□ 0.63
HMGCLL1-209ENST00000515546 HSP90B1P14625 803 aaKnown RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms