RNA–Protein interactions for RNA: ENST00000515529.4

DDR1-279, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 4

Gene DDR1, Length 340 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-279	ENST00000515529	ISCA1	Q9BUE6	129 aa		33.16	■■■□□ 2.9
DDR1-279	ENST00000515529	METTL22	Q9BUU2	404 aa	Predicted RBP	33.16	■■■□□ 2.9
DDR1-279	ENST00000515529	TRMT112	Q9UI30	125 aa	Known RBP	33.16	■■■□□ 2.9
DDR1-279	ENST00000515529	RNF123	Q5XPI4	1314 aa		33.16	■■■□□ 2.9
DDR1-279	ENST00000515529	GRIN3B	O60391	1043 aa		33.15	■■■□□ 2.9
DDR1-279	ENST00000515529	YBX3	P16989	372 aa	Known RBP eCLIP	33.15	■■■□□ 2.9
DDR1-279	ENST00000515529	DALRD3	Q5D0E6	543 aa	Known RBP	33.15	■■■□□ 2.9
DDR1-279	ENST00000515529	ZNF622	Q969S3	477 aa	Known RBP eCLIP	33.15	■■■□□ 2.9
DDR1-279	ENST00000515529	KCNA3	P22001	575 aa		33.14	■■■□□ 2.9
DDR1-279	ENST00000515529	ANKRD31	Q8N7Z5	1873 aa		33.13	■■■□□ 2.89
DDR1-279	ENST00000515529	ADCY9	O60503	1353 aa		33.12	■■■□□ 2.89
DDR1-279	ENST00000515529	ABCC12	Q96J65	1359 aa		33.12	■■■□□ 2.89
DDR1-279	ENST00000515529	TRIM28	Q13263	835 aa	Known RBP	33.12	■■■□□ 2.89
DDR1-279	ENST00000515529	SH3TC1	Q8TE82	1336 aa		33.11	■■■□□ 2.89
DDR1-279	ENST00000515529	TTLL6	Q8N841	843 aa		33.1	■■■□□ 2.89
DDR1-279	ENST00000515529	ALDH1L2	Q3SY69	923 aa		33.09	■■■□□ 2.89
DDR1-279	ENST00000515529	CCDC191	Q8NCU4	936 aa		33.09	■■■□□ 2.89
DDR1-279	ENST00000515529	MASTL	Q96GX5	879 aa		33.09	■■■□□ 2.89
DDR1-279	ENST00000515529	SRGN	P10124	158 aa		33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	STYK1	Q6J9G0	422 aa		33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	DNAAF4	Q8WXU2	420 aa		33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	SSH1	Q8WYL5	1049 aa		33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	SMC4	Q9NTJ3	1288 aa		33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	CWC25	Q9NXE8	425 aa	Predicted RBP	33.08	■■■□□ 2.89
DDR1-279	ENST00000515529	NPR1	P16066	1061 aa		33.07	■■■□□ 2.88
DDR1-279	ENST00000515529	MRPL50	Q8N5N7	158 aa	Known RBP	33.07	■■■□□ 2.88
DDR1-279	ENST00000515529	CNKSR1	Q969H4	720 aa		33.07	■■■□□ 2.88
DDR1-279	ENST00000515529	NLRP3	Q96P20	1036 aa		33.07	■■■□□ 2.88
DDR1-279	ENST00000515529	RIC1	Q4ADV7	1423 aa		33.07	■■■□□ 2.88
DDR1-279	ENST00000515529	KLRG2	A4D1S0	409 aa	Predicted RBP	33.06	■■■□□ 2.88
DDR1-279	ENST00000515529	BCL2L13	Q9BXK5	485 aa		33.06	■■■□□ 2.88
DDR1-279	ENST00000515529	SLC10A5	Q5PT55	438 aa		33.05	■■■□□ 2.88
DDR1-279	ENST00000515529	RPGR	Q92834	1020 aa	Known RBP	33.05	■■■□□ 2.88
DDR1-279	ENST00000515529	FAM89A	Q96GI7	184 aa		33.05	■■■□□ 2.88
DDR1-279	ENST00000515529	DLEC1	Q9Y238	1755 aa		33.05	■■■□□ 2.88
DDR1-279	ENST00000515529	BRCA1	P38398	1863 aa	Known RBP	33.05	■■■□□ 2.88
DDR1-279	ENST00000515529	COL11A2	P13942	1736 aa	Predicted RBP	33.04	■■■□□ 2.88
DDR1-279	ENST00000515529	HCLS1	P14317	486 aa	Predicted RBP	33.03	■■■□□ 2.88
DDR1-279	ENST00000515529	HSP90B1	P14625	803 aa	Known RBP	33.03	■■■□□ 2.88
DDR1-279	ENST00000515529	RTL5	Q5HYW3	569 aa	Predicted RBP	33.03	■■■□□ 2.88
DDR1-279	ENST00000515529	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.02	■■■□□ 2.88
DDR1-279	ENST00000515529	TNRC6C	Q9HCJ0	1690 aa	Known RBP	33.01	■■■□□ 2.88
DDR1-279	ENST00000515529		F6X3S4	739 aa		33.01	■■■□□ 2.87
DDR1-279	ENST00000515529	IGKV5-2	P06315	115 aa		33.01	■■■□□ 2.87
DDR1-279	ENST00000515529	SYNE4	Q8N205	404 aa		33.01	■■■□□ 2.87
DDR1-279	ENST00000515529	PTPRC	P08575	1304 aa		33.01	■■■□□ 2.87
DDR1-279	ENST00000515529	NEURL1B	A8MQ27	555 aa		33	■■■□□ 2.87
DDR1-279	ENST00000515529	ALDH1B1	P30837	517 aa		33	■■■□□ 2.87
DDR1-279	ENST00000515529	CWF19L2	Q2TBE0	894 aa	Known RBP	33	■■■□□ 2.87
DDR1-279	ENST00000515529	CRY2	Q49AN0	593 aa		33	■■■□□ 2.87
DDR1-279	ENST00000515529	LINS1	Q8NG48	757 aa		33	■■■□□ 2.87
DDR1-279	ENST00000515529	PCCA	P05165	728 aa	Predicted RBP	32.99	■■■□□ 2.87
DDR1-279	ENST00000515529	ARHGAP27	Q6ZUM4	889 aa		32.99	■■■□□ 2.87
DDR1-279	ENST00000515529	RBM17	Q96I25	401 aa	Known RBP	32.99	■■■□□ 2.87
DDR1-279	ENST00000515529	IRS4	O14654	1257 aa	Predicted RBP	32.98	■■■□□ 2.87
DDR1-279	ENST00000515529	PRPF40B	Q6NWY9	871 aa	Known RBP	32.98	■■■□□ 2.87
DDR1-279	ENST00000515529	SLC4A10	Q6U841	1118 aa		32.98	■■■□□ 2.87
DDR1-279	ENST00000515529	RARS	P54136	660 aa	Known RBP	32.97	■■■□□ 2.87
DDR1-279	ENST00000515529	ZNF219	Q9P2Y4	722 aa	Predicted RBP	32.97	■■■□□ 2.87
DDR1-279	ENST00000515529	ARFGEF1	Q9Y6D6	1849 aa		32.96	■■■□□ 2.87
DDR1-279	ENST00000515529	C3orf67	Q6ZVT6	689 aa		32.96	■■■□□ 2.87
DDR1-279	ENST00000515529	HOXA10	P31260	410 aa	Predicted RBP	32.94	■■■□□ 2.86
DDR1-279	ENST00000515529	GCKR	Q14397	625 aa		32.94	■■■□□ 2.86
DDR1-279	ENST00000515529	C21orf2	O43822	256 aa		32.93	■■■□□ 2.86
DDR1-279	ENST00000515529	BEND3	Q5T5X7	828 aa		32.93	■■■□□ 2.86
DDR1-279	ENST00000515529	JARID2	Q92833	1246 aa	Predicted RBP	32.93	■■■□□ 2.86
DDR1-279	ENST00000515529	SOGA3	Q5TF21	947 aa		32.92	■■■□□ 2.86
DDR1-279	ENST00000515529	DDX46	Q7L014	1031 aa	Known RBP	32.92	■■■□□ 2.86
DDR1-279	ENST00000515529	CRAMP1	Q96RY5	1269 aa		32.92	■■■□□ 2.86
DDR1-279	ENST00000515529	UBE3B	Q7Z3V4	1068 aa		32.91	■■■□□ 2.86
DDR1-279	ENST00000515529	SRCIN1	Q9C0H9	1055 aa		32.91	■■■□□ 2.86
DDR1-279	ENST00000515529	KIF16B	Q96L93	1317 aa		32.91	■■■□□ 2.86
DDR1-279	ENST00000515529	CDHR2	Q9BYE9	1310 aa		32.91	■■■□□ 2.86
DDR1-279	ENST00000515529	GOLGB1	Q14789	3259 aa	Known RBP	32.9	■■■□□ 2.86
DDR1-279	ENST00000515529	PDE8A	O60658	829 aa		32.9	■■■□□ 2.86
DDR1-279	ENST00000515529	BRPF1	P55201	1214 aa	Predicted RBP	32.9	■■■□□ 2.86
DDR1-279	ENST00000515529	NOB1	Q9ULX3	412 aa	Known RBP	32.9	■■■□□ 2.86
DDR1-279	ENST00000515529	ALDH1L1	O75891	902 aa		32.89	■■■□□ 2.86
DDR1-279	ENST00000515529	CACNA1S	Q13698	1873 aa		32.88	■■■□□ 2.85
DDR1-279	ENST00000515529	YY1	P25490	414 aa		32.88	■■■□□ 2.85
DDR1-279	ENST00000515529	API5	Q9BZZ5	524 aa	Known RBP	32.88	■■■□□ 2.85
DDR1-279	ENST00000515529	DDX60	Q8IY21	1712 aa	Known RBP	32.88	■■■□□ 2.85
DDR1-279	ENST00000515529	SLX4	Q8IY92	1834 aa		32.87	■■■□□ 2.85
DDR1-279	ENST00000515529		H7C1W4	665 aa		32.87	■■■□□ 2.85
DDR1-279	ENST00000515529	SF3B3	Q15393	1217 aa	Known RBP	32.87	■■■□□ 2.85
DDR1-279	ENST00000515529	TMX4	Q9H1E5	349 aa	Predicted RBP	32.87	■■■□□ 2.85
DDR1-279	ENST00000515529	CHD4	Q14839	1912 aa		32.87	■■■□□ 2.85
DDR1-279	ENST00000515529	YTHDC1	Q96MU7	727 aa	Known RBP	32.86	■■■□□ 2.85
DDR1-279	ENST00000515529	C9orf78	Q9NZ63	289 aa	Predicted RBP	32.86	■■■□□ 2.85
DDR1-279	ENST00000515529	LAMB2	P55268	1798 aa		32.86	■■■□□ 2.85
DDR1-279	ENST00000515529	ABCC4	O15439	1325 aa		32.85	■■■□□ 2.85
DDR1-279	ENST00000515529	PPEF1	O14829	653 aa	Predicted RBP	32.85	■■■□□ 2.85
DDR1-279	ENST00000515529	IPO8	O15397	1037 aa	Known RBP	32.85	■■■□□ 2.85
DDR1-279	ENST00000515529	CCDC152	Q4G0S7	254 aa		32.85	■■■□□ 2.85
DDR1-279	ENST00000515529	CCDC93	Q567U6	631 aa		32.85	■■■□□ 2.85
DDR1-279	ENST00000515529	GRAP	Q13588	217 aa		32.83	■■■□□ 2.85
DDR1-279	ENST00000515529	GRAPL	Q8TC17	118 aa	Predicted RBP	32.83	■■■□□ 2.85
DDR1-279	ENST00000515529	BCAR3	O75815	825 aa		32.82	■■■□□ 2.84
DDR1-279	ENST00000515529	BBOX1	O75936	387 aa		32.82	■■■□□ 2.84
DDR1-279	ENST00000515529	FRAT1	Q92837	279 aa	Predicted RBP	32.82	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms