RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 JARID2Q92833 1246 aaPredicted RBP14.85□□□□□ -0.03
VCAN-212ENST00000515397 TRMT112Q9UI30 125 aaKnown RBP14.85□□□□□ -0.03
VCAN-212ENST00000515397 COL11A2P13942 1736 aaPredicted RBP14.85□□□□□ -0.03
VCAN-212ENST00000515397 SLX4Q8IY92 1834 aa14.85□□□□□ -0.03
VCAN-212ENST00000515397 LMNB1P20700 586 aa14.84□□□□□ -0.03
VCAN-212ENST00000515397 C1QTNF8P60827 252 aa14.84□□□□□ -0.03
VCAN-212ENST00000515397 TWISTNBQ3B726 338 aaPredicted RBP14.84□□□□□ -0.03
VCAN-212ENST00000515397 CCDC30Q5VVM6 783 aa14.84□□□□□ -0.03
VCAN-212ENST00000515397 NMRK2Q9NPI5 230 aa14.84□□□□□ -0.03
VCAN-212ENST00000515397 ARFGEF1Q9Y6D6 1849 aa14.84□□□□□ -0.03
VCAN-212ENST00000515397 EXOSC9Q06265 439 aaKnown RBP14.83□□□□□ -0.04
VCAN-212ENST00000515397 CRY2Q49AN0 593 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 HSP90AB3PQ58FF7 597 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 G2E3Q7L622 706 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 WDR63Q8IWG1 891 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 RPGRQ92834 1020 aaKnown RBP14.83□□□□□ -0.04
VCAN-212ENST00000515397 FAM89AQ96GI7 184 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 IL16Q14005 1332 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 FANCIQ9NVI1 1328 aa14.83□□□□□ -0.04
VCAN-212ENST00000515397 ALDH1B1P30837 517 aa14.82□□□□□ -0.04
VCAN-212ENST00000515397 GOLGA2Q08379 1002 aa14.82□□□□□ -0.04
VCAN-212ENST00000515397 NLRP3Q96P20 1036 aa14.82□□□□□ -0.04
VCAN-212ENST00000515397 MYD88Q99836 296 aa14.82□□□□□ -0.04
VCAN-212ENST00000515397 ISCA1Q9BUE6 129 aa14.82□□□□□ -0.04
VCAN-212ENST00000515397 KIF3CO14782 793 aa14.81□□□□□ -0.04
VCAN-212ENST00000515397 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
VCAN-212ENST00000515397 SLC10A5Q5PT55 438 aa14.81□□□□□ -0.04
VCAN-212ENST00000515397 RBM17Q96I25 401 aaKnown RBP14.81□□□□□ -0.04
VCAN-212ENST00000515397 RRAGCQ9HB90 399 aa14.81□□□□□ -0.04
VCAN-212ENST00000515397 ZNF277Q9NRM2 450 aaPredicted RBP14.81□□□□□ -0.04
VCAN-212ENST00000515397 TNRC6CQ9HCJ0 1690 aaKnown RBP14.81□□□□□ -0.04
VCAN-212ENST00000515397 DLEC1Q9Y238 1755 aa14.8□□□□□ -0.04
VCAN-212ENST00000515397 CCDC93Q567U6 631 aa14.8□□□□□ -0.04
VCAN-212ENST00000515397 TAOK3Q9H2K8 898 aa14.8□□□□□ -0.04
VCAN-212ENST00000515397 SH3TC1Q8TE82 1336 aa14.8□□□□□ -0.04
VCAN-212ENST00000515397 PI4KAP2A4QPH2 592 aa14.79□□□□□ -0.04
VCAN-212ENST00000515397 VAMP4O75379 141 aa14.79□□□□□ -0.04
VCAN-212ENST00000515397 HOXA10P31260 410 aaPredicted RBP14.79□□□□□ -0.04
VCAN-212ENST00000515397 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
VCAN-212ENST00000515397 PI4KAP1Q8N8J0 262 aa14.79□□□□□ -0.04
VCAN-212ENST00000515397 STK31Q9BXU1 1019 aa14.79□□□□□ -0.04
VCAN-212ENST00000515397 MAP3K2Q9Y2U5 619 aa14.79□□□□□ -0.04
VCAN-212ENST00000515397 CACNA1SQ13698 1873 aa14.78□□□□□ -0.04
VCAN-212ENST00000515397 IBTKQ9P2D0 1353 aaPredicted RBP14.78□□□□□ -0.04
VCAN-212ENST00000515397 CRAMP1Q96RY5 1269 aa14.78□□□□□ -0.04
VCAN-212ENST00000515397 SBF1O95248 1867 aa14.78□□□□□ -0.04
VCAN-212ENST00000515397 PPEF1O14829 653 aaPredicted RBP14.77□□□□□ -0.05
VCAN-212ENST00000515397 SOGA3Q5TF21 947 aa14.77□□□□□ -0.05
VCAN-212ENST00000515397 METTL22Q9BUU2 404 aaPredicted RBP14.77□□□□□ -0.05
VCAN-212ENST00000515397 ABCC4O15439 1325 aa14.76□□□□□ -0.05
VCAN-212ENST00000515397 IRS4O14654 1257 aaPredicted RBP14.76□□□□□ -0.05
VCAN-212ENST00000515397 DDX58O95786 925 aaKnown RBP14.76□□□□□ -0.05
VCAN-212ENST00000515397 FKBP4Q02790 459 aaKnown RBP eCLIP14.76□□□□□ -0.05
VCAN-212ENST00000515397 TRIM28Q13263 835 aaKnown RBP14.76□□□□□ -0.05
VCAN-212ENST00000515397 KSR2Q6VAB6 950 aa14.76□□□□□ -0.05
VCAN-212ENST00000515397 MIER1Q8N108 512 aa14.76□□□□□ -0.05
VCAN-212ENST00000515397 CCDC85AQ96PX6 553 aaPredicted RBP14.76□□□□□ -0.05
VCAN-212ENST00000515397 KDM2BQ8NHM5 1336 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 LTBP3Q9NS15 1303 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 GLTPD2A6NH11 291 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 DDNO94850 711 aaPredicted RBP14.75□□□□□ -0.05
VCAN-212ENST00000515397 IGKV5-2P06315 115 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 CWF19L2Q2TBE0 894 aaKnown RBP14.75□□□□□ -0.05
VCAN-212ENST00000515397 DDX46Q7L014 1031 aaKnown RBP14.75□□□□□ -0.05
VCAN-212ENST00000515397 RTKN2Q8IZC4 609 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 MYH16Q9H6N6 1097 aa14.75□□□□□ -0.05
VCAN-212ENST00000515397 CCDC88AQ3V6T2 1871 aa14.74□□□□□ -0.05
VCAN-212ENST00000515397 ZNF521Q96K83 1311 aa14.74□□□□□ -0.05
VCAN-212ENST00000515397 FLIIQ13045 1269 aa14.74□□□□□ -0.05
VCAN-212ENST00000515397 DIEXFQ68CQ4 756 aaKnown RBP14.74□□□□□ -0.05
VCAN-212ENST00000515397 CDCA7LQ96GN5 454 aa14.74□□□□□ -0.05
VCAN-212ENST00000515397 CHMP4AQ9BY43 222 aa14.74□□□□□ -0.05
VCAN-212ENST00000515397 CWC25Q9NXE8 425 aaPredicted RBP14.74□□□□□ -0.05
VCAN-212ENST00000515397 RNF123Q5XPI4 1314 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 POTECB2RU33 542 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 F6X3S4 739 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 FKBP5Q13451 457 aaPredicted RBP14.73□□□□□ -0.05
VCAN-212ENST00000515397 DPY19L2Q6NUT2 758 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 ZBTB38Q8NAP3 1195 aaPredicted RBP14.73□□□□□ -0.05
VCAN-212ENST00000515397 CCDC191Q8NCU4 936 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 CELF1Q92879 486 aaKnown RBP14.73□□□□□ -0.05
VCAN-212ENST00000515397 SEC31BQ9NQW1 1179 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 RIC1Q4ADV7 1423 aa14.73□□□□□ -0.05
VCAN-212ENST00000515397 FER1L6Q2WGJ9 1857 aa14.72□□□□□ -0.05
VCAN-212ENST00000515397 CCER2I3L3R5 266 aa14.72□□□□□ -0.05
VCAN-212ENST00000515397 IARSP41252 1262 aaKnown RBP14.72□□□□□ -0.05
VCAN-212ENST00000515397 GRAPQ13588 217 aa14.72□□□□□ -0.05
VCAN-212ENST00000515397 C16orf71Q8IYS4 520 aaPredicted RBP14.72□□□□□ -0.05
VCAN-212ENST00000515397 GRAPLQ8TC17 118 aaPredicted RBP14.72□□□□□ -0.05
VCAN-212ENST00000515397 ATP6V0A2Q9Y487 856 aa14.72□□□□□ -0.05
VCAN-212ENST00000515397 ZNF541Q9H0D2 1346 aa14.71□□□□□ -0.05
VCAN-212ENST00000515397 BBOX1O75936 387 aa14.71□□□□□ -0.05
VCAN-212ENST00000515397 PCCAP05165 728 aaPredicted RBP14.71□□□□□ -0.05
VCAN-212ENST00000515397 SF3B3Q15393 1217 aaKnown RBP14.71□□□□□ -0.05
VCAN-212ENST00000515397 ANKRD36CQ5JPF3 1778 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 TAF1P21675 1872 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 NEURL1BA8MQ27 555 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 TOMM70O94826 608 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 SLFN5Q08AF3 891 aa14.7□□□□□ -0.06
VCAN-212ENST00000515397 NEXNQ0ZGT2 675 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms