RNA–Protein interactions for RNA: ENST00000515339.5

PACRGL-233, Transcript of parkin coregulated like, human

TSL 4

Gene PACRGL, Length 543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PACRGL-233	ENST00000515339	HOXB7	P09629	217 aa		28.73	■■■□□ 2.19
PACRGL-233	ENST00000515339	ZNF853	P0CG23	659 aa		28.73	■■■□□ 2.19
PACRGL-233	ENST00000515339	DUSP27	Q5VZP5	1158 aa		28.72	■■■□□ 2.19
PACRGL-233	ENST00000515339	C3orf67	Q6ZVT6	689 aa		28.72	■■■□□ 2.19
PACRGL-233	ENST00000515339	RPGR	Q92834	1020 aa	Known RBP	28.72	■■■□□ 2.19
PACRGL-233	ENST00000515339	UTP14A	Q9BVJ6	771 aa	Known RBP	28.71	■■■□□ 2.19
PACRGL-233	ENST00000515339	IFT57	Q9NWB7	429 aa		28.71	■■■□□ 2.19
PACRGL-233	ENST00000515339	WDR90	Q96KV7	1748 aa		28.69	■■■□□ 2.18
PACRGL-233	ENST00000515339	GNAI1	P63096	354 aa		28.69	■■■□□ 2.18
PACRGL-233	ENST00000515339	FKBP4	Q02790	459 aa	Known RBP eCLIP	28.69	■■■□□ 2.18
PACRGL-233	ENST00000515339	HSP90AB3P	Q58FF7	597 aa		28.69	■■■□□ 2.18
PACRGL-233	ENST00000515339	DPY19L2	Q6NUT2	758 aa		28.69	■■■□□ 2.18
PACRGL-233	ENST00000515339	VEGFA	P15692	232 aa	Predicted RBP	28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	HOXA10	P31260	410 aa	Predicted RBP	28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	CALD1	Q05682	793 aa	Known RBP	28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	NLRP10	Q86W26	655 aa		28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	ZNF277	Q9NRM2	450 aa	Predicted RBP	28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	DBF4	Q9UBU7	674 aa	Predicted RBP	28.68	■■■□□ 2.18
PACRGL-233	ENST00000515339	LAMB2	P55268	1798 aa		28.67	■■■□□ 2.18
PACRGL-233	ENST00000515339	TCIRG1	Q13488	830 aa		28.67	■■■□□ 2.18
PACRGL-233	ENST00000515339	RTKN2	Q8IZC4	609 aa		28.67	■■■□□ 2.18
PACRGL-233	ENST00000515339	POTEC	B2RU33	542 aa		28.66	■■■□□ 2.18
PACRGL-233	ENST00000515339	SLC51A	Q86UW1	340 aa		28.66	■■■□□ 2.18
PACRGL-233	ENST00000515339	ZNF428	Q96B54	188 aa		28.66	■■■□□ 2.18
PACRGL-233	ENST00000515339	RBM17	Q96I25	401 aa	Known RBP	28.66	■■■□□ 2.18
PACRGL-233	ENST00000515339	SNED1	Q8TER0	1413 aa		28.66	■■■□□ 2.18
PACRGL-233	ENST00000515339	ELL2	O00472	640 aa	Predicted RBP	28.65	■■■□□ 2.18
PACRGL-233	ENST00000515339	FSTL1	Q12841	308 aa		28.65	■■■□□ 2.18
PACRGL-233	ENST00000515339	SYNE4	Q8N205	404 aa		28.65	■■■□□ 2.18
PACRGL-233	ENST00000515339	NLRP3	Q96P20	1036 aa		28.65	■■■□□ 2.18
PACRGL-233	ENST00000515339	APLP1	P51693	650 aa		28.64	■■■□□ 2.18
PACRGL-233	ENST00000515339	SLC10A5	Q5PT55	438 aa		28.64	■■■□□ 2.18
PACRGL-233	ENST00000515339	PLBD2	Q8NHP8	589 aa		28.64	■■■□□ 2.18
PACRGL-233	ENST00000515339	CRAMP1	Q96RY5	1269 aa		28.64	■■■□□ 2.18
PACRGL-233	ENST00000515339	TCERG1	O14776	1098 aa	Known RBP	28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	ANP32C	O43423	234 aa		28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	DDN	O94850	711 aa	Predicted RBP	28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	ANKRD13D	Q6ZTN6	518 aa		28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	MRS2	Q9HD23	443 aa		28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	HYPK	Q9NX55	129 aa		28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	TRMT112	Q9UI30	125 aa	Known RBP	28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	RNF123	Q5XPI4	1314 aa		28.63	■■■□□ 2.17
PACRGL-233	ENST00000515339	HCLS1	P14317	486 aa	Predicted RBP	28.62	■■■□□ 2.17
PACRGL-233	ENST00000515339	PPEF1	O14829	653 aa	Predicted RBP	28.61	■■■□□ 2.17
PACRGL-233	ENST00000515339	C8orf58	Q8NAV2	365 aa		28.61	■■■□□ 2.17
PACRGL-233	ENST00000515339	SMC1B	Q8NDV3	1235 aa		28.61	■■■□□ 2.17
PACRGL-233	ENST00000515339	IARS	P41252	1262 aa	Known RBP	28.6	■■■□□ 2.17
PACRGL-233	ENST00000515339	CC2D2B	Q6DHV5	1058 aa		28.59	■■■□□ 2.17
PACRGL-233	ENST00000515339	PSMD1	Q99460	953 aa		28.59	■■■□□ 2.17
PACRGL-233	ENST00000515339	SH3TC1	Q8TE82	1336 aa		28.59	■■■□□ 2.17
PACRGL-233	ENST00000515339	ZNF541	Q9H0D2	1346 aa		28.59	■■■□□ 2.17
PACRGL-233	ENST00000515339	DDX60	Q8IY21	1712 aa	Known RBP	28.58	■■■□□ 2.17
PACRGL-233	ENST00000515339	ATP5J2-PTCD1	G3V325	749 aa		28.58	■■■□□ 2.17
PACRGL-233	ENST00000515339	PHAX	Q9H814	394 aa	Known RBP	28.58	■■■□□ 2.17
PACRGL-233	ENST00000515339	ABCC4	O15439	1325 aa		28.58	■■■□□ 2.17
PACRGL-233	ENST00000515339	TSR2	Q969E8	191 aa	Known RBP	28.57	■■■□□ 2.16
PACRGL-233	ENST00000515339	ISCA1	Q9BUE6	129 aa		28.57	■■■□□ 2.16
PACRGL-233	ENST00000515339	COL4A5	P29400	1685 aa		28.57	■■■□□ 2.16
PACRGL-233	ENST00000515339	TAF1	P21675	1872 aa		28.56	■■■□□ 2.16
PACRGL-233	ENST00000515339	HTRA3	P83110	453 aa		28.56	■■■□□ 2.16
PACRGL-233	ENST00000515339	CCDC27	Q2M243	656 aa		28.55	■■■□□ 2.16
PACRGL-233	ENST00000515339	WWC1	Q8IX03	1113 aa		28.55	■■■□□ 2.16
PACRGL-233	ENST00000515339	TSPYL6	Q8N831	410 aa		28.55	■■■□□ 2.16
PACRGL-233	ENST00000515339	GOLGA2	Q08379	1002 aa		28.53	■■■□□ 2.16
PACRGL-233	ENST00000515339	RIC3	Q7Z5B4	369 aa		28.53	■■■□□ 2.16
PACRGL-233	ENST00000515339	FAM89A	Q96GI7	184 aa		28.53	■■■□□ 2.16
PACRGL-233	ENST00000515339	ATP6V0A2	Q9Y487	856 aa		28.53	■■■□□ 2.16
PACRGL-233	ENST00000515339	SCN4A	P35499	1836 aa		28.53	■■■□□ 2.16
PACRGL-233	ENST00000515339	FZD9	O00144	591 aa		28.52	■■■□□ 2.16
PACRGL-233	ENST00000515339	DNAJC5G	Q8N7S2	189 aa		28.52	■■■□□ 2.16
PACRGL-233	ENST00000515339	POTEI	P0CG38	1075 aa		28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	POTEJ	P0CG39	1038 aa		28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	GRIPAP1	Q4V328	841 aa		28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	RTL5	Q5HYW3	569 aa	Predicted RBP	28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	DDX46	Q7L014	1031 aa	Known RBP	28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	JDP2	Q8WYK2	163 aa		28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	L3MBTL3	Q96JM7	780 aa	Predicted RBP	28.51	■■■□□ 2.15
PACRGL-233	ENST00000515339	CCDC30	Q5VVM6	783 aa		28.5	■■■□□ 2.15
PACRGL-233	ENST00000515339	TMX4	Q9H1E5	349 aa	Predicted RBP	28.5	■■■□□ 2.15
PACRGL-233	ENST00000515339	LARGE2	Q8N3Y3	721 aa		28.49	■■■□□ 2.15
PACRGL-233	ENST00000515339	IQCA1L	A6NCM1	817 aa		28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	BBOX1	O75936	387 aa		28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	TRIM28	Q13263	835 aa	Known RBP	28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	GRAP	Q13588	217 aa		28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	GRAPL	Q8TC17	118 aa	Predicted RBP	28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	MYD88	Q99836	296 aa		28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	SALL2	Q9Y467	1007 aa	Predicted RBP	28.48	■■■□□ 2.15
PACRGL-233	ENST00000515339	TAF1D	Q9H5J8	278 aa	Predicted RBP	28.47	■■■□□ 2.15
PACRGL-233	ENST00000515339	SP8	Q8IXZ3	490 aa		28.46	■■■□□ 2.15
PACRGL-233	ENST00000515339	IL16	Q14005	1332 aa		28.45	■■■□□ 2.15
PACRGL-233	ENST00000515339	IRS4	O14654	1257 aa	Predicted RBP	28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	PPIP5K2	O43314	1243 aa		28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	CHADL	Q6NUI6	762 aa		28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	GPC2	Q8N158	579 aa		28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	CHMP4A	Q9BY43	222 aa		28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	COL4A1	P02462	1669 aa		28.45	■■■□□ 2.14
PACRGL-233	ENST00000515339	EIF6	P56537	245 aa	Known RBP	28.44	■■■□□ 2.14
PACRGL-233	ENST00000515339	AOC3	Q16853	763 aa		28.44	■■■□□ 2.14
PACRGL-233	ENST00000515339	TWISTNB	Q3B726	338 aa	Predicted RBP	28.44	■■■□□ 2.14
PACRGL-233	ENST00000515339	NCBP3	Q53F19	620 aa	Known RBP	28.44	■■■□□ 2.14

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms