RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 RBCK1Q9BYM8 510 aa9.07□□□□□ -0.96
HMGCS1-207ENST00000514610 RTCBQ9Y3I0 505 aaKnown RBP9.07□□□□□ -0.96
HMGCS1-207ENST00000514610 DCDC2BA2VCK2 349 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 TRIP4Q15650 581 aaPredicted RBP9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 TMC7Q7Z402 723 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 GJD3Q8N144 294 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 GTPBP3Q969Y2 492 aaKnown RBP9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 ASB16Q96NS5 453 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 BRD7Q9NPI1 651 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 STRN4Q9NRL3 753 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 PCDHGC4Q9Y5F7 938 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 KCNMB2Q9Y691 235 aa9.06□□□□□ -0.96
HMGCS1-207ENST00000514610 BNIP3LO60238 219 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 WFS1O76024 890 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 VEGFBP49765 207 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 TNP2Q05952 138 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 SFSWAPQ12872 951 aaKnown RBP9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 GRIN2CQ14957 1233 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 FIGNL1Q6PIW4 674 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 GGNBP2Q9H3C7 697 aa9.05□□□□□ -0.96
HMGCS1-207ENST00000514610 ANKRD33BA6NCL7 494 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 A6NHS1 94 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 KHNYNO15037 678 aaKnown RBP9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 MAPTP10636 758 aaKnown RBP9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 VWA5B2Q8N398 1253 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 ABHD17AQ96GS6 310 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 GMCL1Q96IK5 515 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 FAM129BQ96TA1 746 aa9.04□□□□□ -0.96
HMGCS1-207ENST00000514610 CDC14CA4D256 554 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 GPR25O00155 361 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 GPR182O15218 404 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 KCNQ4P56696 695 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 NPAS4Q8IUM7 802 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 CMTR1Q8N1G2 835 aaKnown RBP9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 FOXD4L4Q8WXT5 416 aaPredicted RBP9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 PIK3R5Q8WYR1 880 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 FAM13BQ9NYF5 915 aa9.03□□□□□ -0.96
HMGCS1-207ENST00000514610 NANOS1Q8WY41 292 aaKnown RBP9.02□□□□□ -0.97
HMGCS1-207ENST00000514610 CITED4Q96RK1 184 aa9.02□□□□□ -0.97
HMGCS1-207ENST00000514610 ZSCAN29Q8IWY8 852 aaPredicted RBP9.01□□□□□ -0.97
HMGCS1-207ENST00000514610 NXF1Q9UBU9 619 aaKnown RBP9.01□□□□□ -0.97
HMGCS1-207ENST00000514610 KCNH4Q9UQ05 1017 aa9.01□□□□□ -0.97
HMGCS1-207ENST00000514610 EPB42P16452 691 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 CD33P20138 364 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 USP5P45974 858 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 DSC3Q14574 896 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 C8orf34Q49A92 452 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 LCE2CQ5TA81 110 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 SV2AQ7L0J3 742 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 TMC1Q8TDI8 760 aa9□□□□□ -0.97
HMGCS1-207ENST00000514610 ATXN7L1Q9ULK2 861 aaPredicted RBP9□□□□□ -0.97
HMGCS1-207ENST00000514610 UBAP1LF5GYI3 381 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 H3BM21 787 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 TREHO43280 583 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 XYLBO75191 536 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 PCSK2P16519 638 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 LAMC2Q13753 1193 aa8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 GPR161Q8N6U8 529 aaKnown RBP8.99□□□□□ -0.97
HMGCS1-207ENST00000514610 EGFRP00533 1210 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 PDE3BQ13370 1112 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 DMRTB1Q96MA1 342 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 SLC30A3Q99726 388 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 CFHR5Q9BXR6 569 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 GSX2Q9BZM3 304 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 MARK1Q9P0L2 795 aa8.98□□□□□ -0.97
HMGCS1-207ENST00000514610 P4HBP07237 508 aaKnown RBP8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 ERCC3P19447 782 aa8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 FGFR3P22607 806 aa8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 CTBSQ01459 385 aa8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 FMR1Q06787 632 aaKnown RBP eCLIP8.97□□□□□ -0.975e-7■□□□□ 10.7
HMGCS1-207ENST00000514610 GAS6Q14393 721 aa8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 ALKBH8Q96BT7 664 aaKnown RBP8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 NIF3L1Q9GZT8 377 aa8.97□□□□□ -0.97
HMGCS1-207ENST00000514610 WIPF1O43516 503 aa8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 RPLP1P05386 114 aaKnown RBP8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 EHHADHQ08426 723 aa8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 XKR5Q6UX68 686 aa8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 TRERF1Q96PN7 1200 aa8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 TMEM63CQ9P1W3 806 aa8.96□□□□□ -0.98
HMGCS1-207ENST00000514610 TERTO14746 1132 aaKnown RBP8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 SASH3O75995 380 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 SPEM2Q0P670 501 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 ORC1Q13415 861 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 CCINQ13939 588 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 PDE12Q6L8Q7 609 aaKnown RBP8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 KRT25Q7Z3Z0 450 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 FBXO33Q7Z6M2 555 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 RAB44Q7Z6P3 723 aaPredicted RBP8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 NPAS3Q8IXF0 933 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 ELP3Q9H9T3 547 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 C11orf16Q9NQ32 467 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 ZFATQ9P243 1243 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 FOXD3Q9UJU5 478 aaPredicted RBP8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 PHF24Q9UPV7 400 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 FNDC3AQ9Y2H6 1198 aaKnown RBP8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 ERBB4Q15303 1308 aa8.95□□□□□ -0.98
HMGCS1-207ENST00000514610 C2CD2LO14523 706 aa8.94□□□□□ -0.98
HMGCS1-207ENST00000514610 TNFRSF21O75509 655 aa8.94□□□□□ -0.98
HMGCS1-207ENST00000514610 VSIG8P0DPA2 414 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms