RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 KIAA2012Q0VF49 1180 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 TRDNQ13061 729 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 ZNF512BQ96KM6 892 aaPredicted RBP8.59□□□□□ -1.03
NIPBL-208ENST00000514335 SENP7Q9BQF6 1050 aa8.59□□□□□ -1.03
NIPBL-208ENST00000514335 CHD2O14647 1828 aaKnown RBP8.59□□□□□ -1.03
NIPBL-208ENST00000514335 MYCLP1P12525 358 aaPredicted RBP8.59□□□□□ -1.03
NIPBL-208ENST00000514335 THRAP3Q9Y2W1 955 aaKnown RBP8.59□□□□□ -1.03
NIPBL-208ENST00000514335 COL16A1Q07092 1604 aaPredicted RBP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 PPP2R5BQ15173 497 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 TBC1D25Q3MII6 688 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 TSGA10IPQ3SY00 556 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 B4GALNT3Q6L9W6 998 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 ARHGAP27Q6ZUM4 889 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 CDC5LQ99459 802 aaKnown RBP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 CD248Q9HCU0 757 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 TBC1D7Q9P0N9 293 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 PPFIA3O75145 1194 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 ENPP1P22413 925 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 STIP1P31948 543 aaKnown RBP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 CCDC91Q7Z6B0 441 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 TRIM11Q96F44 468 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 MMTAG2Q9BU76 263 aaKnown RBP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 POLR3CQ9BUI4 534 aaPredicted RBP8.58□□□□□ -1.04
NIPBL-208ENST00000514335 RASSF4Q9H2L5 321 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 GJA3Q9Y6H8 435 aa8.58□□□□□ -1.04
NIPBL-208ENST00000514335 CCDC92Q53HC0 331 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 NAIF1Q69YI7 327 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 TRMT1Q9NXH9 659 aaKnown RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 TBC1D2BQ9UPU7 963 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 SLC45A1Q9Y2W3 748 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 V9GYY5 206 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 CEP152O94986 1710 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 HTATSF1O43719 755 aaKnown RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 TPPPO94811 219 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 SLFN14P0C7P3 912 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 CCDC178Q5BJE1 867 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 LMBRD2Q68DH5 695 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 ZBED9Q6R2W3 1325 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 HOXD11P31277 338 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 ATP6V1AP38606 617 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 ZNF132P52740 706 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 RAD51AP2Q09MP3 1159 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 C10orf62Q5T681 223 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 NCAPG2Q86XI2 1143 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 SLC7A5P2Q9GIP4 190 aa8.57□□□□□ -1.04
NIPBL-208ENST00000514335 ALDH8A1Q9H2A2 487 aaPredicted RBP8.57□□□□□ -1.04
NIPBL-208ENST00000514335 TNRQ92752 1358 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TMCO5BA8MYB1 307 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 HOXA2O43364 376 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 HIP1RO75146 1068 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TCF3P15923 654 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 CA8P35219 290 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TBX4P57082 545 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 HSP90B2PQ58FF3 399 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 SOGA3Q5TF21 947 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 WAPLQ7Z5K2 1190 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TXNDC2Q86VQ3 553 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 ANKRD13BQ86YJ7 626 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TEKT1Q969V4 418 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 JRKLQ9Y4A0 524 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 U3KPZ7 1027 aaPredicted RBP8.56□□□□□ -1.04
NIPBL-208ENST00000514335 RAD50Q92878 1312 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 SCAF11Q99590 1463 aaKnown RBP8.56□□□□□ -1.04
NIPBL-208ENST00000514335 TOM1O60784 492 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 LDHCP07864 332 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 PRIM1P49642 420 aaKnown RBP8.56□□□□□ -1.04
NIPBL-208ENST00000514335 FAM117BQ6P1L5 589 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 PLPP6Q8IY26 295 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 SPACA7Q96KW9 195 aa8.56□□□□□ -1.04
NIPBL-208ENST00000514335 EIF3JO75822 258 aaKnown RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 RASSF7Q02833 373 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 GABPB1Q06547 395 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 ADCY2Q08462 1091 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 PREPLQ4J6C6 727 aaPredicted RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 FMNL3Q8IVF7 1028 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 SAMD3Q8N6K7 520 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 LSM14AQ8ND56 463 aaKnown RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 CCDC34Q96HJ3 373 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 IQCGQ9H095 443 aaKnown RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 CPSF2Q9P2I0 782 aaKnown RBP8.55□□□□□ -1.04
NIPBL-208ENST00000514335 IVNS1ABPQ9Y6Y0 642 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 ADGRL2O95490 1459 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 USP5P45974 858 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 SYNE3Q6ZMZ3 975 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 SLF2Q8IX21 1173 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 UBXN4Q92575 508 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 POM121Q96HA1 1249 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 NACA2Q9H009 215 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 VEZTQ9HBM0 779 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 CHMP5Q9NZZ3 219 aa8.55□□□□□ -1.04
NIPBL-208ENST00000514335 XRN1Q8IZH2 1706 aaKnown RBP8.54□□□□□ -1.04
NIPBL-208ENST00000514335 BICDL2A1A5D9 508 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 WWC2Q6AWC2 1192 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 TMEM110Q86TL2 294 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 VMP1Q96GC9 406 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 DHRS1Q96LJ7 313 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 NEXMIFQ5QGS0 1516 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 MMEP08473 750 aa8.54□□□□□ -1.04
NIPBL-208ENST00000514335 ZBED6P86452 979 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms