RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 UBE3BQ7Z3V4 1068 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 LUZP1Q86V48 1076 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 PIBF1Q8WXW3 757 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 NPHP3Q7Z494 1330 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 FAM177BA6PVY3 158 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 FILIP1LQ4L180 1135 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 DDX46Q7L014 1031 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 VPS37DQ86XT2 251 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 TRIM22Q8IYM9 498 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC94Q9BW85 323 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 BRMS1Q9HCU9 246 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC171Q6TFL3 1326 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 LAMC1P11047 1609 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 ZFYVE16Q7Z3T8 1539 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 BIN1O00499 593 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 GSDMDP57764 484 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 ZSCAN25Q6NSZ9 544 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 MAP3K4Q9Y6R4 1608 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 ATP5J2-PTCD1G3V325 749 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 PTCD1O75127 700 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 DACH1Q9UI36 760 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 IBTKQ9P2D0 1353 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC69A6NI79 296 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 Q6ZUG5 572 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 LINS1Q8NG48 757 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 HOXC9P31274 260 aa9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC47Q96A33 483 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-216ENST00000512820 TET3O43151 1660 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 SLC3A2P08195 630 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 SKILP12757 684 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 AKAP4Q5JQC9 854 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 TMC6Q7Z403 805 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 PPFIBP1Q86W92 1011 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 POLR3DP05423 398 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 NBPF7P0C2Y1 421 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 FAM173BQ6P4H8 233 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 NOC3LQ8WTT2 800 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 ACBD3Q9H3P7 528 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 OSBPL3Q9H4L5 887 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 SHROOM2Q13796 1616 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 EPB41L2O43491 1005 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 USP44Q9H0E7 712 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 ERBB4Q15303 1308 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 GOLGA8BA8MQT2 603 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 MARCH6O60337 910 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 IDH1O75874 414 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 MYRIPQ8NFW9 859 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 PTCH1Q13635 1447 aa9.81□□□□□ -0.84
LIMCH1-216ENST00000512820 ERICH4A6NGS2 130 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 ANKRD13DQ6ZTN6 518 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 XAGE3Q8WTP9 111 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 SMARCE1Q969G3 411 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 SBNO1A3KN83 1393 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 AATKQ6ZMQ8 1374 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 URI1O94763 535 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 MCMDC2Q4G0Z9 681 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 TMCO3Q6UWJ1 677 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 ANKRD24Q8TF21 1146 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 BABAM1Q9NWV8 329 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 USP16Q9Y5T5 823 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 FAM135BQ49AJ0 1406 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 SNW1Q13573 536 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 COPS6Q7L5N1 327 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 NUP133Q8WUM0 1156 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 ORC3Q9UBD5 711 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 AKAP2Q9Y2D5 859 aa9.8□□□□□ -0.84
LIMCH1-216ENST00000512820 SSH2Q76I76 1423 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 TOP1P11387 765 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 HAND2P61296 217 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 TOM1L2Q6ZVM7 507 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 SSH3Q8TE77 659 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 LRRC59Q96AG4 307 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 KIF2CQ99661 725 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 NACAP1Q9BZK3 213 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 ZNF213O14771 459 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 SLC27A2O14975 620 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 SLC39A6Q13433 755 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 SNRKQ9NRH2 765 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 KIF1BO60333 1816 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 ZSCAN12O43309 604 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 ISM2Q6H9L7 571 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 RAB11FIP4Q86YS3 637 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 UNC5CLQ8IV45 518 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 FAM227BQ96M60 508 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 CDC42BPBQ9Y5S2 1711 aa9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 BICC1Q9H694 974 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 CWC15Q9P013 229 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-216ENST00000512820 RPS6KB1P23443 525 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 CUL4AQ13619 759 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 METTL24Q5JXM2 366 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 AOPEPQ8N6M6 819 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 MRPS27Q92552 414 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 STAP2Q9UGK3 403 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 RGS12O14924 1447 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 AIDAQ96BJ3 306 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 ARHGEF10O15013 1369 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 EFCAB6Q5THR3 1501 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 PLEKHG3A1L390 1219 aa9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 SNRPA1P09661 255 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-216ENST00000512820 WASF1Q92558 559 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms