RNA–Protein interactions for RNA: ENST00000512293.1

PDLIM3-207, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 581 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-207ENST00000512293 RNF123Q5XPI4 1314 aa23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 TTLL7Q6ZT98 887 aa23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 ZNF34Q8IZ26 560 aa23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 RPGRQ92834 1020 aaKnown RBP23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 CRAMP1Q96RY5 1269 aa23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 PRDM10Q9NQV6 1147 aa23.13■■□□□ 1.29
PDLIM3-207ENST00000512293 UBN2Q6ZU65 1347 aa23.12■■□□□ 1.29
PDLIM3-207ENST00000512293 VEGFBP49765 207 aa23.12■■□□□ 1.29
PDLIM3-207ENST00000512293 NGEFQ8N5V2 710 aa23.12■■□□□ 1.29
PDLIM3-207ENST00000512293 CLEC11AQ9Y240 323 aa23.12■■□□□ 1.29
PDLIM3-207ENST00000512293 RRP7AQ9Y3A4 280 aaKnown RBP23.12■■□□□ 1.29
PDLIM3-207ENST00000512293 EIF6P56537 245 aaKnown RBP23.11■■□□□ 1.29
PDLIM3-207ENST00000512293 SUSD4Q5VX71 490 aa23.11■■□□□ 1.29
PDLIM3-207ENST00000512293 GIGYF2Q6Y7W6 1299 aaKnown RBP23.11■■□□□ 1.29
PDLIM3-207ENST00000512293 CNTROBQ8N137 903 aa23.11■■□□□ 1.29
PDLIM3-207ENST00000512293 COL4A5P29400 1685 aa23.1■■□□□ 1.29
PDLIM3-207ENST00000512293 RASSF10A6NK89 507 aa23.1■■□□□ 1.29
PDLIM3-207ENST00000512293 FOXN1O15353 648 aa23.1■■□□□ 1.29
PDLIM3-207ENST00000512293 NTSR2O95665 410 aa23.1■■□□□ 1.29
PDLIM3-207ENST00000512293 RBM17Q96I25 401 aaKnown RBP23.1■■□□□ 1.29
PDLIM3-207ENST00000512293 MYL6BP14649 208 aa23.09■■□□□ 1.29
PDLIM3-207ENST00000512293 PARP10Q53GL7 1025 aa23.09■■□□□ 1.29
PDLIM3-207ENST00000512293 VPS33BQ9H267 617 aa23.09■■□□□ 1.29
PDLIM3-207ENST00000512293 ZBTB3Q9H5J0 574 aa23.09■■□□□ 1.29
PDLIM3-207ENST00000512293 GPTP24298 496 aa23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 CTCFP49711 727 aaPredicted RBP23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 MAP1SQ66K74 1059 aaPredicted RBP23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 PPP1R42Q7Z4L9 355 aa23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 BABAM1Q9NWV8 329 aa23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 WBP1LQ9NX94 342 aa23.08■■□□□ 1.29
PDLIM3-207ENST00000512293 LTBP1Q14766 1721 aa23.08■■□□□ 1.28
PDLIM3-207ENST00000512293 LRP10Q7Z4F1 713 aa23.07■■□□□ 1.28
PDLIM3-207ENST00000512293 AIDAQ96BJ3 306 aa23.07■■□□□ 1.28
PDLIM3-207ENST00000512293 THUMPD2Q9BTF0 503 aaKnown RBP23.07■■□□□ 1.28
PDLIM3-207ENST00000512293 MAPK8IP3Q9UPT6 1336 aa23.07■■□□□ 1.28
PDLIM3-207ENST00000512293 PPEF1O14829 653 aaPredicted RBP23.06■■□□□ 1.28
PDLIM3-207ENST00000512293 LMOD1P29536 600 aaPredicted RBP23.06■■□□□ 1.28
PDLIM3-207ENST00000512293 DEFB115Q30KQ5 88 aa23.06■■□□□ 1.28
PDLIM3-207ENST00000512293 SLC10A5Q5PT55 438 aa23.06■■□□□ 1.28
PDLIM3-207ENST00000512293 SCNN1DP51172 638 aa23.05■■□□□ 1.28
PDLIM3-207ENST00000512293 LARGE2Q8N3Y3 721 aa23.05■■□□□ 1.28
PDLIM3-207ENST00000512293 NLRP3Q96P20 1036 aa23.05■■□□□ 1.28
PDLIM3-207ENST00000512293 PDIA6Q15084 440 aa23.04■■□□□ 1.28
PDLIM3-207ENST00000512293 USP50Q70EL3 339 aaPredicted RBP23.04■■□□□ 1.28
PDLIM3-207ENST00000512293 DDX21Q9NR30 783 aaKnown RBP eCLIP23.04■■□□□ 1.28
PDLIM3-207ENST00000512293 GJA3Q9Y6H8 435 aa23.04■■□□□ 1.28
PDLIM3-207ENST00000512293 TSPYL4Q9UJ04 414 aa23.03■■□□□ 1.28
PDLIM3-207ENST00000512293 ATP6V0A2Q9Y487 856 aa23.03■■□□□ 1.28
PDLIM3-207ENST00000512293 ANKRD36CQ5JPF3 1778 aa23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 C3orf67Q6ZVT6 689 aa23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 NIM1KQ8IY84 436 aa23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 UTP14AQ9BVJ6 771 aaKnown RBP23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 TMX4Q9H1E5 349 aaPredicted RBP23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 TRPM7Q96QT4 1865 aa23.02■■□□□ 1.28
PDLIM3-207ENST00000512293 THSD7BQ9C0I4 1608 aa23.01■■□□□ 1.27
PDLIM3-207ENST00000512293 EPS15P42566 896 aa23.01■■□□□ 1.27
PDLIM3-207ENST00000512293 MAP2K1Q02750 393 aaPredicted RBP23.01■■□□□ 1.27
PDLIM3-207ENST00000512293 RTFDC1Q9BY42 306 aaPredicted RBP23.01■■□□□ 1.27
PDLIM3-207ENST00000512293 WDR33Q9C0J8 1336 aaKnown RBP23.01■■□□□ 1.27
PDLIM3-207ENST00000512293 SUPT20HQ8NEM7 779 aa23■■□□□ 1.27
PDLIM3-207ENST00000512293 PPIP5K2O43314 1243 aa22.99■■□□□ 1.27
PDLIM3-207ENST00000512293 BBOX1O75936 387 aa22.99■■□□□ 1.27
PDLIM3-207ENST00000512293 HSP90AB3PQ58FF7 597 aa22.99■■□□□ 1.27
PDLIM3-207ENST00000512293 ABT1Q9ULW3 272 aaKnown RBP22.99■■□□□ 1.27
PDLIM3-207ENST00000512293 LAMB2P55268 1798 aa22.99■■□□□ 1.27
PDLIM3-207ENST00000512293 RIPK4P57078 832 aa22.98■■□□□ 1.27
PDLIM3-207ENST00000512293 LMOD3Q0VAK6 560 aa22.98■■□□□ 1.27
PDLIM3-207ENST00000512293 ABCC4O15439 1325 aa22.98■■□□□ 1.27
PDLIM3-207ENST00000512293 EIF2S2P20042 333 aaKnown RBP22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 LBX1P52954 281 aa22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 SLC51AQ86UW1 340 aa22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 SP8Q8IXZ3 490 aa22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 ADARB2Q9NS39 739 aaKnown RBP22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 GPRC5DQ9NZD1 345 aa22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 ZNRF3Q9ULT6 936 aa22.97■■□□□ 1.27
PDLIM3-207ENST00000512293 TCERG1O14776 1098 aaKnown RBP22.96■■□□□ 1.27
PDLIM3-207ENST00000512293 ECE1P42892 770 aa22.96■■□□□ 1.27
PDLIM3-207ENST00000512293 AOC3Q16853 763 aa22.96■■□□□ 1.27
PDLIM3-207ENST00000512293 PROSER3Q2NL68 480 aa22.96■■□□□ 1.27
PDLIM3-207ENST00000512293 CDHR2Q9BYE9 1310 aa22.96■■□□□ 1.27
PDLIM3-207ENST00000512293 HSPA8P11142 646 aaKnown RBP22.95■■□□□ 1.26
PDLIM3-207ENST00000512293 NLRP10Q86W26 655 aa22.95■■□□□ 1.26
PDLIM3-207ENST00000512293 TMPOP42166 694 aaKnown RBP22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 CXCL9Q07325 125 aa22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 RALBP1Q15311 655 aa22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 CST9Q5W186 159 aa22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 COPS6Q7L5N1 327 aa22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 PGAP2Q9UHJ9 254 aa22.94■■□□□ 1.26
PDLIM3-207ENST00000512293 KIAA2012Q0VF49 1180 aa22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 TCIRG1Q13488 830 aa22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 DPP8Q6V1X1 898 aaPredicted RBP22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 TMC4Q7Z404 712 aa22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 CAPNS2Q96L46 248 aa22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 TLL2Q9Y6L7 1015 aa22.93■■□□□ 1.26
PDLIM3-207ENST00000512293 ANXA1P04083 346 aa22.92■■□□□ 1.26
PDLIM3-207ENST00000512293 MPNDQ8N594 471 aa22.92■■□□□ 1.26
PDLIM3-207ENST00000512293 SH3TC1Q8TE82 1336 aa22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 FMR1Q06787 632 aaKnown RBP eCLIP22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 GRAPQ13588 217 aa22.91■■□□□ 1.26
PDLIM3-207ENST00000512293 DDX46Q7L014 1031 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms