RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 SLC51AQ86UW1 340 aa17.21■□□□□ 0.35
RNF4-215ENST00000511843 SYNE4Q8N205 404 aa17.21■□□□□ 0.35
RNF4-215ENST00000511843 PHAXQ9H814 394 aaKnown RBP17.21■□□□□ 0.35
RNF4-215ENST00000511843 TCIRG1Q13488 830 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 PARP10Q53GL7 1025 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 PPP1R42Q7Z4L9 355 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 NLRP10Q86W26 655 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 HYPKQ9NX55 129 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 RIC1Q4ADV7 1423 aa17.2■□□□□ 0.34
RNF4-215ENST00000511843 ATP5J2-PTCD1G3V325 749 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 LMNB1P20700 586 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 C1QTNF8P60827 252 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 CRY2Q49AN0 593 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 ANKRD13DQ6ZTN6 518 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 PLBD2Q8NHP8 589 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 UTP14AQ9BVJ6 771 aaKnown RBP17.19■□□□□ 0.34
RNF4-215ENST00000511843 NMRK2Q9NPI5 230 aa17.19■□□□□ 0.34
RNF4-215ENST00000511843 HSP90AB3PQ58FF7 597 aa17.18■□□□□ 0.34
RNF4-215ENST00000511843 C7orf43Q8WVR3 580 aa17.18■□□□□ 0.34
RNF4-215ENST00000511843 KIF3CO14782 793 aa17.17■□□□□ 0.34
RNF4-215ENST00000511843 HCLS1P14317 486 aaPredicted RBP17.17■□□□□ 0.34
RNF4-215ENST00000511843 RPGRQ92834 1020 aaKnown RBP17.17■□□□□ 0.34
RNF4-215ENST00000511843 IL16Q14005 1332 aa17.17■□□□□ 0.34
RNF4-215ENST00000511843 FANCIQ9NVI1 1328 aa17.17■□□□□ 0.34
RNF4-215ENST00000511843 RTL5Q5HYW3 569 aaPredicted RBP17.16■□□□□ 0.34
RNF4-215ENST00000511843 CCDC30Q5VVM6 783 aa17.16■□□□□ 0.34
RNF4-215ENST00000511843 TAOK3Q9H2K8 898 aa17.16■□□□□ 0.34
RNF4-215ENST00000511843 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
RNF4-215ENST00000511843 TRMT112Q9UI30 125 aaKnown RBP17.16■□□□□ 0.34
RNF4-215ENST00000511843 CACNA1FO60840 1977 aa17.15■□□□□ 0.34
RNF4-215ENST00000511843 TWISTNBQ3B726 338 aaPredicted RBP17.15■□□□□ 0.34
RNF4-215ENST00000511843 CCDC93Q567U6 631 aa17.15■□□□□ 0.34
RNF4-215ENST00000511843 RIC3Q7Z5B4 369 aa17.15■□□□□ 0.34
RNF4-215ENST00000511843 ISCA1Q9BUE6 129 aa17.15■□□□□ 0.34
RNF4-215ENST00000511843 ALDH1B1P30837 517 aa17.14■□□□□ 0.33
RNF4-215ENST00000511843 GOLGA2Q08379 1002 aa17.14■□□□□ 0.33
RNF4-215ENST00000511843 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
RNF4-215ENST00000511843 NLRP3Q96P20 1036 aa17.14■□□□□ 0.33
RNF4-215ENST00000511843 SH3TC1Q8TE82 1336 aa17.14■□□□□ 0.33
RNF4-215ENST00000511843 LTBP3Q9NS15 1303 aa17.14■□□□□ 0.33
RNF4-215ENST00000511843 COL4A1P02462 1669 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 HOXA10P31260 410 aaPredicted RBP17.13■□□□□ 0.33
RNF4-215ENST00000511843 SLC10A5Q5PT55 438 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 SOGA3Q5TF21 947 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 G2E3Q7L622 706 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 WDR63Q8IWG1 891 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 FAM89AQ96GI7 184 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 MYD88Q99836 296 aa17.13■□□□□ 0.33
RNF4-215ENST00000511843 ZNF277Q9NRM2 450 aaPredicted RBP17.13■□□□□ 0.33
RNF4-215ENST00000511843 EXOSC9Q06265 439 aaKnown RBP17.12■□□□□ 0.33
RNF4-215ENST00000511843 RBM17Q96I25 401 aaKnown RBP17.12■□□□□ 0.33
RNF4-215ENST00000511843 RRAGCQ9HB90 399 aa17.12■□□□□ 0.33
RNF4-215ENST00000511843 SNED1Q8TER0 1413 aa17.12■□□□□ 0.33
RNF4-215ENST00000511843 JARID2Q92833 1246 aaPredicted RBP17.11■□□□□ 0.33
RNF4-215ENST00000511843 STK31Q9BXU1 1019 aa17.11■□□□□ 0.33
RNF4-215ENST00000511843 ABCC4O15439 1325 aa17.11■□□□□ 0.33
RNF4-215ENST00000511843 RNF123Q5XPI4 1314 aa17.11■□□□□ 0.33
RNF4-215ENST00000511843 KDM2BQ8NHM5 1336 aa17.11■□□□□ 0.33
RNF4-215ENST00000511843 PPEF1O14829 653 aaPredicted RBP17.1■□□□□ 0.33
RNF4-215ENST00000511843 FKBP4Q02790 459 aaKnown RBP eCLIP17.1■□□□□ 0.33
RNF4-215ENST00000511843 CRAMP1Q96RY5 1269 aa17.1■□□□□ 0.33
RNF4-215ENST00000511843 MAP3K2Q9Y2U5 619 aa17.1■□□□□ 0.33
RNF4-215ENST00000511843 COL4A5P29400 1685 aa17.1■□□□□ 0.33
RNF4-215ENST00000511843 SPEF2Q9C093 1822 aa17.1■□□□□ 0.33
RNF4-215ENST00000511843 MYH3P11055 1940 aa17.09■□□□□ 0.33
RNF4-215ENST00000511843 GLTPD2A6NH11 291 aa17.09■□□□□ 0.33
RNF4-215ENST00000511843 SLC4A2P04920 1241 aa17.09■□□□□ 0.33
RNF4-215ENST00000511843 ZC3H4Q9UPT8 1303 aaKnown RBP17.09■□□□□ 0.33
RNF4-215ENST00000511843 WDR90Q96KV7 1748 aa17.09■□□□□ 0.33
RNF4-215ENST00000511843 LRRC37AA6NMS7 1700 aa17.08■□□□□ 0.32
RNF4-215ENST00000511843 PI4KAP2A4QPH2 592 aa17.08■□□□□ 0.32
RNF4-215ENST00000511843 VAMP4O75379 141 aa17.08■□□□□ 0.32
RNF4-215ENST00000511843 RTKN2Q8IZC4 609 aa17.08■□□□□ 0.32
RNF4-215ENST00000511843 PI4KAP1Q8N8J0 262 aa17.08■□□□□ 0.32
RNF4-215ENST00000511843 METTL22Q9BUU2 404 aaPredicted RBP17.08■□□□□ 0.32
RNF4-215ENST00000511843 ZNF521Q96K83 1311 aa17.07■□□□□ 0.32
RNF4-215ENST00000511843 DDX58O95786 925 aaKnown RBP17.07■□□□□ 0.32
RNF4-215ENST00000511843 TRIM28Q13263 835 aaKnown RBP17.07■□□□□ 0.32
RNF4-215ENST00000511843 KSR2Q6VAB6 950 aa17.07■□□□□ 0.32
RNF4-215ENST00000511843 ZNF541Q9H0D2 1346 aa17.06■□□□□ 0.32
RNF4-215ENST00000511843 IRS4O14654 1257 aaPredicted RBP17.06■□□□□ 0.32
RNF4-215ENST00000511843 DDNO94850 711 aaPredicted RBP17.06■□□□□ 0.32
RNF4-215ENST00000511843 CHMP4AQ9BY43 222 aa17.06■□□□□ 0.32
RNF4-215ENST00000511843 TOMM70O94826 608 aa17.05■□□□□ 0.32
RNF4-215ENST00000511843 IGKV5-2P06315 115 aa17.05■□□□□ 0.32
RNF4-215ENST00000511843 IARSP41252 1262 aaKnown RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 CWF19L2Q2TBE0 894 aaKnown RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 DDX46Q7L014 1031 aaKnown RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 C16orf71Q8IYS4 520 aaPredicted RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 ZBTB38Q8NAP3 1195 aaPredicted RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 MYH16Q9H6N6 1097 aa17.05■□□□□ 0.32
RNF4-215ENST00000511843 CWC25Q9NXE8 425 aaPredicted RBP17.05■□□□□ 0.32
RNF4-215ENST00000511843 POTECB2RU33 542 aa17.04■□□□□ 0.32
RNF4-215ENST00000511843 FLIIQ13045 1269 aa17.04■□□□□ 0.32
RNF4-215ENST00000511843 GRAPQ13588 217 aa17.04■□□□□ 0.32
RNF4-215ENST00000511843 CCDC191Q8NCU4 936 aa17.04■□□□□ 0.32
RNF4-215ENST00000511843 GRAPLQ8TC17 118 aaPredicted RBP17.04■□□□□ 0.32
RNF4-215ENST00000511843 ATP6V0A2Q9Y487 856 aa17.04■□□□□ 0.32
RNF4-215ENST00000511843 DUOX1Q9NRD9 1551 aa17.03■□□□□ 0.32
RNF4-215ENST00000511843 PCCAP05165 728 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms