RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 SARM1Q6SZW1 724 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 RUFY2Q8WXA3 655 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 ZNF592Q92610 1267 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 DNAJC25Q9H1X3 360 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 OVOS2A0A0J9YW53 1432 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 OVOS2Q6IE36 1432 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 RIMS1Q86UR5 1692 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 MAP3K19Q56UN5 1328 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 GOLGA6L4A6NEF3 574 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 LEO1Q8WVC0 666 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 SPATA32Q96LK8 384 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 USP27XA6NNY8 438 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 ERO1AQ96HE7 468 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 LRRC37A3O60309 1634 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 METP08581 1390 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 NALCNQ8IZF0 1738 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 TTC41PQ6P2S7 1318 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 FBXO38Q6PIJ6 1188 aa20.21■□□□□ 0.83
SQSTM1-211ENST00000506690 NR1I2O75469 434 aa20.2■□□□□ 0.82
SQSTM1-211ENST00000506690 PTPN14Q15678 1187 aa20.2■□□□□ 0.82
SQSTM1-211ENST00000506690 TXNDC2Q86VQ3 553 aa20.2■□□□□ 0.82
SQSTM1-211ENST00000506690 MRFAP1L1Q96HT8 127 aa20.2■□□□□ 0.82
SQSTM1-211ENST00000506690 ZBTB22O15209 634 aa20.19■□□□□ 0.82
SQSTM1-211ENST00000506690 GLRX3O76003 335 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-211ENST00000506690 IQCB1Q15051 598 aa20.19■□□□□ 0.82
SQSTM1-211ENST00000506690 TMEM2Q9UHN6 1383 aa20.19■□□□□ 0.82
SQSTM1-211ENST00000506690 ERBB3P21860 1342 aa20.19■□□□□ 0.82
SQSTM1-211ENST00000506690 IRX5P78411 483 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 CREBRFQ8IUR6 639 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 KCND1Q9NSA2 647 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 FER1L4A9Z1Z3 1794 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 UBR1Q8IWV7 1749 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 SRGAP3O43295 1099 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 KCNJ4P48050 445 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 NECTIN2Q92692 538 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 PGBD1Q96JS3 809 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 TFIP11Q9UBB9 837 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 KDRP35968 1356 aa20.18■□□□□ 0.82
SQSTM1-211ENST00000506690 ZKSCAN1P17029 563 aaPredicted RBP20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 ARID5BQ14865 1188 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 TIGD1Q96MW7 591 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 NRXN3Q9Y4C0 1643 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 SKILP12757 684 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 ELF2Q15723 593 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 V9GYY5 206 aaPredicted RBP20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 PRR36Q9H6K5 1346 aa20.17■□□□□ 0.82
SQSTM1-211ENST00000506690 CCZ1BP86790 482 aa20.16■□□□□ 0.82
SQSTM1-211ENST00000506690 CCZ1P86791 482 aaPredicted RBP20.16■□□□□ 0.82
SQSTM1-211ENST00000506690 CREB3L3Q68CJ9 461 aa20.16■□□□□ 0.82
SQSTM1-211ENST00000506690 DDX54Q8TDD1 881 aaKnown RBP20.16■□□□□ 0.82
SQSTM1-211ENST00000506690 USP31Q70CQ4 1352 aa20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 FMN2Q9NZ56 1722 aa20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 HTATSF1O43719 755 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 GIGYF1O75420 1035 aaPredicted RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 SLU7O95391 586 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 LARP1Q6PKG0 1096 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 ZNF446Q9NWS9 450 aa20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 GOLGA6L19H0YKK7 550 aa20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 HSP90AB4PQ58FF6 505 aa20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 CCAR2Q8N163 923 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 BCL11BQ9C0K0 894 aaPredicted RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 RBM8AQ9Y5S9 174 aaKnown RBP20.15■□□□□ 0.82
SQSTM1-211ENST00000506690 BICD2Q8TD16 824 aa20.14■□□□□ 0.82
SQSTM1-211ENST00000506690 ALDH8A1Q9H2A2 487 aaPredicted RBP20.14■□□□□ 0.82
SQSTM1-211ENST00000506690 CALCOCO1Q9P1Z2 691 aa20.14■□□□□ 0.82
SQSTM1-211ENST00000506690 PSMA5P28066 241 aa20.14■□□□□ 0.81
SQSTM1-211ENST00000506690 COL9A3Q14050 684 aaPredicted RBP20.14■□□□□ 0.81
SQSTM1-211ENST00000506690 RNF20Q5VTR2 975 aa20.14■□□□□ 0.81
SQSTM1-211ENST00000506690 MAP4K1Q92918 833 aa20.14■□□□□ 0.81
SQSTM1-211ENST00000506690 LTKP29376 864 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 SLC20A2Q08357 652 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 ANKRD1Q15327 319 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 CCDC69A6NI79 296 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 C11orf57Q6ZUT1 292 aaPredicted RBP20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 ST7Q9NRC1 585 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 ADCY9O60503 1353 aa20.13■□□□□ 0.81
SQSTM1-211ENST00000506690 KIF2AO00139 706 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 TULP2O00295 520 aa20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 NBPF7P0C2Y1 421 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 H2AFXP16104 143 aaPredicted RBP20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 SIRT1Q96EB6 747 aa20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 ECHDC1Q9NTX5 307 aa20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 USP16Q9Y5T5 823 aa20.12■□□□□ 0.81
SQSTM1-211ENST00000506690 SLC27A2O14975 620 aa20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 PHAXQ9H814 394 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 L2HGDHQ9H9P8 463 aa20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 CEP170BQ9Y4F5 1589 aaPredicted RBP20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 TECPR2O15040 1411 aa20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 EVI5LQ96CN4 794 aa20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 SNRKQ9NRH2 765 aa20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 TRMT1Q9NXH9 659 aaKnown RBP20.11■□□□□ 0.81
SQSTM1-211ENST00000506690 ERICH4A6NGS2 130 aa20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 CDK11BP21127 795 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 TOB2Q14106 344 aaPredicted RBP20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 BMS1Q14692 1282 aaKnown RBP20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 STX1AQ16623 288 aa20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 IGSF1Q8N6C5 1336 aa20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 CYP2C19P33261 490 aa20.1■□□□□ 0.81
SQSTM1-211ENST00000506690 RESTQ13127 1097 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms