RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 VPS37DQ86XT2 251 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 MAFAQ8NHW3 353 aaPredicted RBP6.26□□□□□ -1.41
USP54-216ENST00000498143 SECISBP2LQ93073 1101 aaKnown RBP6.26□□□□□ -1.41
USP54-216ENST00000498143 SUDS3Q9H7L9 328 aaPredicted RBP6.26□□□□□ -1.41
USP54-216ENST00000498143 PRDM6Q9NQX0 595 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 RYDENQ9NUL5 291 aaKnown RBP6.26□□□□□ -1.41
USP54-216ENST00000498143 MYO3AQ8NEV4 1616 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 SP3Q02447 781 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 NLRP3Q96P20 1036 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 DISP2A7MBM2 1401 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 CACNA1AO00555 2505 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 RIMBP2O15034 1052 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 SUPT20HL1Q3ZLR7 823 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 COA7Q96BR5 231 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 METP08581 1390 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 IREB2P48200 963 aaKnown RBP6.25□□□□□ -1.41
USP54-216ENST00000498143 NBPF9Q3BBW0 867 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 PDE3AQ14432 1141 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 CCDC85BQ15834 202 aaPredicted RBP6.25□□□□□ -1.41
USP54-216ENST00000498143 UTP14AQ9BVJ6 771 aaKnown RBP6.25□□□□□ -1.41
USP54-216ENST00000498143 MSRAQ9UJ68 235 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 KCPQ6ZWJ8 1503 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 RASSF10A6NK89 507 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 SETSIPP0DME0 302 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 TEX13AQ9BXU3 409 aaPredicted RBP6.25□□□□□ -1.41
USP54-216ENST00000498143 NYXQ9GZU5 481 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 NSFL1CQ9UNZ2 370 aaKnown RBP6.25□□□□□ -1.41
USP54-216ENST00000498143 CHMP3Q9Y3E7 222 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 PITPNM2Q9BZ72 1349 aa6.25□□□□□ -1.41
USP54-216ENST00000498143 TRAF5O00463 557 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 GSE1Q14687 1217 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 CCDC27Q2M243 656 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 MYO9BQ13459 2157 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 TNS2Q63HR2 1409 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 ZBBXA8MT70 800 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 INHBEP58166 350 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 HMGN5P82970 282 aaKnown RBP6.24□□□□□ -1.41
USP54-216ENST00000498143 GPC2Q8N158 579 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 PPRC1Q5VV67 1664 aaKnown RBP6.24□□□□□ -1.41
USP54-216ENST00000498143 ADGRL2O95490 1459 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 MANSC4A6NHS7 340 aaPredicted RBP6.24□□□□□ -1.41
USP54-216ENST00000498143 RPS6KA4O75676 772 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 TNNI2P48788 182 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 ZSCAN29Q8IWY8 852 aaPredicted RBP6.24□□□□□ -1.41
USP54-216ENST00000498143 RNF186Q9NXI6 227 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 CACNA1BQ00975 2339 aa6.24□□□□□ -1.41
USP54-216ENST00000498143 TNFRSF10AO00220 468 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 GOLIM4O00461 696 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 NAP1L1P55209 391 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 DDX10Q13206 875 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 GRIPAP1Q4V328 841 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 TJAP1Q5JTD0 557 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 NBPF10Q6P3W6 841 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 STK24Q9Y6E0 443 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 MAP3K5Q99683 1374 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 TMCO5BA8MYB1 307 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 FOXK2Q01167 660 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 ARHGEF1Q92888 912 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 HOOK2Q96ED9 719 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 UHRF1Q96T88 793 aaPredicted RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 STAP2Q9UGK3 403 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 TBC1D2BQ9UPU7 963 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 NIP7Q9Y221 180 aaKnown RBP eCLIP6.23□□□□□ -1.41
USP54-216ENST00000498143 KIF28PB7ZC32 967 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 TMED8Q6PL24 325 aaPredicted RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 CNOT7Q9UIV1 285 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 NPR1P16066 1061 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 HSP90AB3PQ58FF7 597 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 ZNF296Q8WUU4 475 aaPredicted RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 UPF2Q9HAU5 1272 aaKnown RBP6.23□□□□□ -1.41
USP54-216ENST00000498143 JAG2Q9Y219 1238 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 IVNS1ABPQ9Y6Y0 642 aa6.23□□□□□ -1.41
USP54-216ENST00000498143 CENPJQ9HC77 1338 aaPredicted RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 MAP3K12Q12852 859 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 CCDC97Q96F63 343 aaPredicted RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 SRP68Q9UHB9 627 aaKnown RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 VWDEQ8N2E2 1590 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 UBE2Q2LH0YL09 131 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 ABCB7O75027 752 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 TPM2P07951 284 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 LMOD3Q0VAK6 560 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 ZBED2Q9BTP6 218 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 NBPF3Q9H094 633 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 RRP7AQ9Y3A4 280 aaKnown RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 RPTORQ8N122 1335 aa6.22□□□□□ -1.41
USP54-216ENST00000498143 U2SURPO15042 1029 aaKnown RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 PRPF40BQ6NWY9 871 aaKnown RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 RRBP1Q9P2E9 1410 aaKnown RBP6.22□□□□□ -1.41
USP54-216ENST00000498143 TNPO2O14787 897 aaKnown RBP6.21□□□□□ -1.41
USP54-216ENST00000498143 ROBO2Q9HCK4 1378 aa6.21□□□□□ -1.41
USP54-216ENST00000498143 TIAM1Q13009 1591 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 GLRX3O76003 335 aaKnown RBP6.21□□□□□ -1.42
USP54-216ENST00000498143 EN2P19622 333 aaPredicted RBP6.21□□□□□ -1.42
USP54-216ENST00000498143 ZNF771Q7L3S4 317 aaPredicted RBP6.21□□□□□ -1.42
USP54-216ENST00000498143 FAM43AQ8N2R8 423 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 IRF2BPLQ9H1B7 796 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 THEGQ9P2T0 379 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 ZBTB12Q9Y330 459 aaPredicted RBP6.21□□□□□ -1.42
USP54-216ENST00000498143 PKD1L2Q7Z442 2459 aa6.21□□□□□ -1.42
USP54-216ENST00000498143 MPHOSPH10O00566 681 aaKnown RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms