RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 DCDC2BA2VCK2 349 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 PALM3A6NDB9 673 aaPredicted RBP7.71□□□□□ -1.17
CSMD3-208ENST00000497026 A6NJR5 290 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 PHF20L1A8MW92 1017 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 C2CD2LO14523 706 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 LGR5O75473 907 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 TATP17735 454 aaPredicted RBP7.71□□□□□ -1.17
CSMD3-208ENST00000497026 FGFR3P22607 806 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 ATP1A2P50993 1020 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 EPHA4P54764 986 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 BICDL1Q6ZP65 573 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 L3MBTL2Q969R5 705 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 KLRG1Q96E93 195 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 ZIC5Q96T25 663 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 ENAMQ9NRM1 1142 aa7.71□□□□□ -1.17
CSMD3-208ENST00000497026 ZNF777Q9ULD5 760 aaPredicted RBP7.71□□□□□ -1.17
CSMD3-208ENST00000497026 MAFBQ9Y5Q3 323 aaPredicted RBP7.71□□□□□ -1.17
CSMD3-208ENST00000497026 CDC42BPBQ9Y5S2 1711 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 BMP4P12644 408 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 RASA1P20936 1047 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 LBRQ14739 615 aaKnown RBP7.7□□□□□ -1.18
CSMD3-208ENST00000497026 PLA2G4EQ3MJ16 856 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 TSEN2Q8NCE0 465 aaKnown RBP7.7□□□□□ -1.18
CSMD3-208ENST00000497026 NEDD1Q8NHV4 660 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 SPOCK3Q9BQ16 436 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 OXCT2Q9BYC2 517 aaPredicted RBP7.7□□□□□ -1.18
CSMD3-208ENST00000497026 TSPAN10Q9H1Z9 355 aaPredicted RBP7.7□□□□□ -1.18
CSMD3-208ENST00000497026 NDFIP2Q9NV92 336 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 ATXN7L1Q9ULK2 861 aaPredicted RBP7.7□□□□□ -1.18
CSMD3-208ENST00000497026 FANCAO15360 1455 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 PREX2Q70Z35 1606 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 CDC42BPAQ5VT25 1732 aa7.7□□□□□ -1.18
CSMD3-208ENST00000497026 ATXN7O15265 892 aaPredicted RBP7.69□□□□□ -1.18
CSMD3-208ENST00000497026 NOS2P35228 1153 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 C1orf229Q6ZS94 237 aaPredicted RBP7.69□□□□□ -1.18
CSMD3-208ENST00000497026 C1orf216Q8TAB5 229 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 KRTAP9-2Q9BYQ4 174 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 HCN2Q9UL51 889 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 PCDHGC4Q9Y5F7 938 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 GJA3Q9Y6H8 435 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 PLCH2O75038 1416 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 PHLDB1Q86UU1 1377 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 CNTNAP5Q8WYK1 1306 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.69□□□□□ -1.18
CSMD3-208ENST00000497026 KHNYNO15037 678 aaKnown RBP7.69□□□□□ -1.18
CSMD3-208ENST00000497026 CD33P20138 364 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 MAP2K3P46734 347 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 LARGE2Q8N3Y3 721 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 GALNT6Q8NCL4 622 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 GAS2L2Q8NHY3 880 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 PPP1R12CQ9BZL4 782 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 AKNAQ7Z591 1439 aa7.69□□□□□ -1.18
CSMD3-208ENST00000497026 K7ELQ4 463 aaPredicted RBP7.68□□□□□ -1.18
CSMD3-208ENST00000497026 LMOD1P29536 600 aaPredicted RBP7.68□□□□□ -1.18
CSMD3-208ENST00000497026 TEAD4Q15561 434 aa7.68□□□□□ -1.18
CSMD3-208ENST00000497026 FIGNL1Q6PIW4 674 aa7.68□□□□□ -1.18
CSMD3-208ENST00000497026 NLRP8Q86W28 1048 aa7.68□□□□□ -1.18
CSMD3-208ENST00000497026 ZDHHC3Q9NYG2 299 aa7.68□□□□□ -1.18
CSMD3-208ENST00000497026 CDK11AQ9UQ88 783 aaPredicted RBP7.68□□□□□ -1.18
CSMD3-208ENST00000497026 HCN4Q9Y3Q4 1203 aa7.68□□□□□ -1.18
CSMD3-208ENST00000497026 VPS8Q8N3P4 1428 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 SERTM1A2A2V5 107 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 SHISA8B8ZZ34 492 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 OIP5O43482 229 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 DKK1O94907 266 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 RAPGEF3O95398 923 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 MAPTP10636 758 aaKnown RBP7.67□□□□□ -1.18
CSMD3-208ENST00000497026 LRRC69Q6ZNQ3 347 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 Q8N3U1 123 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 RBM19Q9Y4C8 960 aaKnown RBP7.67□□□□□ -1.18
CSMD3-208ENST00000497026 ZMYM4Q5VZL5 1548 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 EHBP1L1Q8N3D4 1523 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 ARHGEF40Q8TER5 1519 aa7.67□□□□□ -1.18
CSMD3-208ENST00000497026 ADGRL1O94910 1474 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 TIAM1Q13009 1591 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 ARHGAP5Q13017 1502 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 TNP2Q05952 138 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 CRTC2Q53ET0 693 aaPredicted RBP7.66□□□□□ -1.18
CSMD3-208ENST00000497026 CDCA8Q53HL2 280 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 SIX5Q8N196 739 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 DCAF5Q96JK2 942 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 STRN4Q9NRL3 753 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 GGA1Q9UJY5 639 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 SIGLEC1Q9BZZ2 1709 aa7.66□□□□□ -1.18
CSMD3-208ENST00000497026 DENND4BO75064 1496 aaPredicted RBP7.66□□□□□ -1.18
CSMD3-208ENST00000497026 POGZQ7Z3K3 1410 aa7.65□□□□□ -1.18
CSMD3-208ENST00000497026 ABCC1P33527 1531 aa7.65□□□□□ -1.18
CSMD3-208ENST00000497026 KRTAP9-6A0A140TA67 174 aa7.65□□□□□ -1.18
CSMD3-208ENST00000497026 EML1O00423 815 aa7.65□□□□□ -1.18
CSMD3-208ENST00000497026 PPP1R12BO60237 982 aaPredicted RBP7.65□□□□□ -1.18
CSMD3-208ENST00000497026 KANK4Q5T7N3 995 aaPredicted RBP7.65□□□□□ -1.18
CSMD3-208ENST00000497026 LARP1Q6PKG0 1096 aaKnown RBP7.65□□□□□ -1.18
CSMD3-208ENST00000497026 BEND7Q8N7W2 519 aaPredicted RBP7.65□□□□□ -1.18
CSMD3-208ENST00000497026 SAMD9LQ8IVG5 1584 aa7.65□□□□□ -1.19
CSMD3-208ENST00000497026 ITSN2Q9NZM3 1697 aa7.65□□□□□ -1.19
CSMD3-208ENST00000497026 SCAPERQ9BY12 1400 aa7.65□□□□□ -1.19
CSMD3-208ENST00000497026 KDM5CP41229 1560 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 NEURL1BA8MQ27 555 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 DPYDQ12882 1025 aa7.64□□□□□ -1.19
CSMD3-208ENST00000497026 GRIN2CQ14957 1233 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms