RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 PHAXQ9H814 394 aaKnown RBP6.66□□□□□ -1.34
USF3-204ENST00000496826 CCDC78A2IDD5 438 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 HCLS1P14317 486 aaPredicted RBP6.66□□□□□ -1.34
USF3-204ENST00000496826 HDXQ7Z353 690 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 FAM13AO94988 1023 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 KRT3P12035 628 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 CASQ1P31415 396 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 CCDC152Q4G0S7 254 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 VPS52Q8N1B4 723 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 RSRC1Q96IZ7 334 aaKnown RBP6.66□□□□□ -1.34
USF3-204ENST00000496826 MAP3K7O43318 606 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 NGEFQ8N5V2 710 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 NEK1Q96PY6 1258 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 FOXP3Q9BZS1 431 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 MRPL40Q9NQ50 206 aaKnown RBP6.66□□□□□ -1.34
USF3-204ENST00000496826 CCDC171Q6TFL3 1326 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 SYCE3A1L190 88 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 IFNA8P32881 189 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 LAMC2Q13753 1193 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 DBN1Q16643 649 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 CROCCP2Q86T23 111 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 TTC5Q8N0Z6 440 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 RPGRIP1LQ68CZ1 1315 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 ZNF263O14978 683 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 AP1S2P56377 157 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 ARHGAP29Q52LW3 1261 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 C1orf141Q5JVX7 400 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 Q9H521 79 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 TERF2IPQ9NYB0 399 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 ARHGEF9O43307 516 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 FAM43AQ8N2R8 423 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 IARS2Q9NSE4 1012 aaKnown RBP6.65□□□□□ -1.34
USF3-204ENST00000496826 PPP2R5AQ15172 486 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 IFT20Q8IY31 132 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 CTNNBL1Q8WYA6 563 aaPredicted RBP6.65□□□□□ -1.34
USF3-204ENST00000496826 KIF1CO43896 1103 aaKnown RBP6.65□□□□□ -1.34
USF3-204ENST00000496826 PLCB4Q15147 1175 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 LETM2Q2VYF4 491 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 KAZNQ674X7 775 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 STK26Q9P289 416 aa6.65□□□□□ -1.34
USF3-204ENST00000496826 CCNB3Q8WWL7 1395 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 NOP14P78316 857 aaKnown RBP6.65□□□□□ -1.35
USF3-204ENST00000496826 ANKRD45Q5TZF3 282 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 E4F1Q66K89 784 aaPredicted RBP6.65□□□□□ -1.35
USF3-204ENST00000496826 HEATR3Q7Z4Q2 680 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 GDAP1L1Q96MZ0 367 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 TRIM7Q9C029 511 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 PALMDQ9NP74 551 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 RGS5O15539 181 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 MAPK8IP2Q13387 824 aaPredicted RBP6.65□□□□□ -1.35
USF3-204ENST00000496826 SLC4A10Q6U841 1118 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 LMNTD2Q8IXW0 634 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 ENOX1Q8TC92 643 aaKnown RBP6.65□□□□□ -1.35
USF3-204ENST00000496826 KRT23Q9C075 422 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 TMOD4Q9NZQ9 345 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 PPFIA4O75335 1185 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 TAF12Q16514 161 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 ATF7IPQ6VMQ6 1270 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 BRPF3Q9ULD4 1205 aa6.65□□□□□ -1.35
USF3-204ENST00000496826 A0A1B0GUA9 196 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 A0A1W2PRG0 241 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 ELMSAN1Q6PJG2 1045 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 BAG5Q9UL15 447 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 EID1Q9Y6B2 187 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 CCDC180Q9P1Z9 1646 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 ZSCAN12O43309 604 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 BAG4O95429 457 aaKnown RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 RILPL1Q5EBL4 403 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 INTS13Q9NVM9 706 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 NFKBIL1Q9UBC1 381 aaPredicted RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 ESRRBO95718 433 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 DDX5P17844 614 aaKnown RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 LCA5Q86VQ0 697 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 SDCCAG3Q96C92 435 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 NACAP1Q9BZK3 213 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 ELL2O00472 640 aaPredicted RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 HDAC4P56524 1084 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 EIF2B5Q13144 721 aaKnown RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 ANKRD1Q15327 319 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 CCDC102BQ68D86 513 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 GAS2L2Q8NHY3 880 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 MORC4Q8TE76 937 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 CEP162Q5TB80 1403 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 ZSCAN25Q6NSZ9 544 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 RUFY3Q7L099 469 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 SCOCQ9UIL1 159 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 CDV3Q9UKY7 258 aaKnown RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 H7C0S8 307 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 PPP1R12AO14974 1030 aaPredicted RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 PSMD2Q13200 908 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 LEO1Q8WVC0 666 aaPredicted RBP6.64□□□□□ -1.35
USF3-204ENST00000496826 TANGO6Q9C0B7 1094 aa6.64□□□□□ -1.35
USF3-204ENST00000496826 FHAD1B1AJZ9 1412 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 TRAF5O00463 557 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 CCDC192P0DO97 292 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 SPECC1Q5M775 1068 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 USP48Q86UV5 1035 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 HAUS7Q99871 368 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 LRMPQ12912 555 aa6.63□□□□□ -1.35
USF3-204ENST00000496826 ZNF365Q70YC5 407 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms