RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RIC1Q4ADV7 1423 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 UTRNP46939 3433 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 ALDH1B1P30837 517 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 NEXNQ0ZGT2 675 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 SOGA3Q5TF21 947 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 NLRP3Q96P20 1036 aa20.96■□□□□ 0.95
SF3A1-209ENST00000496189 TCERG1O14776 1098 aaKnown RBP20.95■□□□□ 0.94
SF3A1-209ENST00000496189 VAMP4O75379 141 aa20.95■□□□□ 0.94
SF3A1-209ENST00000496189 HSP90B1P14625 803 aaKnown RBP20.95■□□□□ 0.94
SF3A1-209ENST00000496189 HNRNPUQ00839 825 aaKnown RBP eCLIP20.95■□□□□ 0.94
SF3A1-209ENST00000496189 SPINK5Q9NQ38 1064 aaPredicted RBP20.95■□□□□ 0.94
SF3A1-209ENST00000496189 SH3TC1Q8TE82 1336 aa20.95■□□□□ 0.94
SF3A1-209ENST00000496189 COL11A2P13942 1736 aaPredicted RBP20.95■□□□□ 0.94
SF3A1-209ENST00000496189 ARFGEF2Q9Y6D5 1785 aa20.95■□□□□ 0.94
SF3A1-209ENST00000496189 KLRG2A4D1S0 409 aaPredicted RBP20.94■□□□□ 0.94
SF3A1-209ENST00000496189 ABCC12Q96J65 1359 aa20.94■□□□□ 0.94
SF3A1-209ENST00000496189 ATP5J2-PTCD1G3V325 749 aa20.93■□□□□ 0.94
SF3A1-209ENST00000496189 PRPF40BQ6NWY9 871 aaKnown RBP20.93■□□□□ 0.94
SF3A1-209ENST00000496189 KSR2Q6VAB6 950 aa20.93■□□□□ 0.94
SF3A1-209ENST00000496189 MYD88Q99836 296 aa20.93■□□□□ 0.94
SF3A1-209ENST00000496189 ZNF219Q9P2Y4 722 aaPredicted RBP20.93■□□□□ 0.94
SF3A1-209ENST00000496189 FKBP5Q13451 457 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-209ENST00000496189 RBM17Q96I25 401 aaKnown RBP20.92■□□□□ 0.94
SF3A1-209ENST00000496189 ISCA1Q9BUE6 129 aa20.92■□□□□ 0.94
SF3A1-209ENST00000496189 TMX4Q9H1E5 349 aaPredicted RBP20.92■□□□□ 0.94
SF3A1-209ENST00000496189 MAP3K2Q9Y2U5 619 aa20.92■□□□□ 0.94
SF3A1-209ENST00000496189 PI4KAP2A4QPH2 592 aa20.91■□□□□ 0.94
SF3A1-209ENST00000496189 C21orf2O43822 256 aa20.91■□□□□ 0.94
SF3A1-209ENST00000496189 FLIIQ13045 1269 aa20.91■□□□□ 0.94
SF3A1-209ENST00000496189 TRIM28Q13263 835 aaKnown RBP20.91■□□□□ 0.94
SF3A1-209ENST00000496189 CRY2Q49AN0 593 aa20.91■□□□□ 0.94
SF3A1-209ENST00000496189 PI4KAP1Q8N8J0 262 aa20.91■□□□□ 0.94
SF3A1-209ENST00000496189 METTL22Q9BUU2 404 aaPredicted RBP20.91■□□□□ 0.94
SF3A1-209ENST00000496189 CACNA1FO60840 1977 aa20.9■□□□□ 0.94
SF3A1-209ENST00000496189 SLC10A5Q5PT55 438 aa20.9■□□□□ 0.94
SF3A1-209ENST00000496189 CCDC191Q8NCU4 936 aa20.9■□□□□ 0.94
SF3A1-209ENST00000496189 SLFN5Q08AF3 891 aa20.89■□□□□ 0.93
SF3A1-209ENST00000496189 CWC25Q9NXE8 425 aaPredicted RBP20.89■□□□□ 0.93
SF3A1-209ENST00000496189 TNRC6CQ9HCJ0 1690 aaKnown RBP20.89■□□□□ 0.93
SF3A1-209ENST00000496189 CACNA1SQ13698 1873 aa20.88■□□□□ 0.93
SF3A1-209ENST00000496189 CCDC93Q567U6 631 aa20.88■□□□□ 0.93
SF3A1-209ENST00000496189 ZNF784Q8NCA9 323 aaPredicted RBP20.88■□□□□ 0.93
SF3A1-209ENST00000496189 ZNF428Q96B54 188 aa20.88■□□□□ 0.93
SF3A1-209ENST00000496189 FAM89AQ96GI7 184 aa20.88■□□□□ 0.93
SF3A1-209ENST00000496189 HCLS1P14317 486 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-209ENST00000496189 HOXA10P31260 410 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-209ENST00000496189 C9orf131Q5VYM1 1079 aa20.87■□□□□ 0.93
SF3A1-209ENST00000496189 DDX46Q7L014 1031 aaKnown RBP20.87■□□□□ 0.93
SF3A1-209ENST00000496189 ZBTB38Q8NAP3 1195 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-209ENST00000496189 CRAMP1Q96RY5 1269 aa20.87■□□□□ 0.93
SF3A1-209ENST00000496189 RNF181Q9P0P0 153 aa20.87■□□□□ 0.93
SF3A1-209ENST00000496189 LMNB1P20700 586 aa20.86■□□□□ 0.93
SF3A1-209ENST00000496189 RTL5Q5HYW3 569 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-209ENST00000496189 G2E3Q7L622 706 aa20.86■□□□□ 0.93
SF3A1-209ENST00000496189 TAOK3Q9H2K8 898 aa20.86■□□□□ 0.93
SF3A1-209ENST00000496189 ADCY9O60503 1353 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 RASSF7Q02833 373 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 GRIPAP1Q4V328 841 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 CC2D2BQ6DHV5 1058 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 RTKN2Q8IZC4 609 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 DNAAF4Q8WXU2 420 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 SLX4Q8IY92 1834 aa20.85■□□□□ 0.93
SF3A1-209ENST00000496189 IRS4O14654 1257 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-209ENST00000496189 PCCAP05165 728 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-209ENST00000496189 CDCA7LQ96GN5 454 aa20.84■□□□□ 0.93
SF3A1-209ENST00000496189 ZBED9Q6R2W3 1325 aa20.83■□□□□ 0.93
SF3A1-209ENST00000496189 PPEF1O14829 653 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-209ENST00000496189 CT47B1P0C2W7 299 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-209ENST00000496189 GPBP1L1Q9HC44 474 aaPredicted RBP20.83■□□□□ 0.93
SF3A1-209ENST00000496189 LTBP3Q9NS15 1303 aa20.82■□□□□ 0.92
SF3A1-209ENST00000496189 SYNE4Q8N205 404 aa20.82■□□□□ 0.92
SF3A1-209ENST00000496189 ZC3H4Q9UPT8 1303 aaKnown RBP20.81■□□□□ 0.92
SF3A1-209ENST00000496189 NFKBIEO00221 500 aa20.81■□□□□ 0.92
SF3A1-209ENST00000496189 BBOX1O75936 387 aa20.81■□□□□ 0.92
SF3A1-209ENST00000496189 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
SF3A1-209ENST00000496189 TRMT2AQ8IZ69 625 aaKnown RBP20.81■□□□□ 0.92
SF3A1-209ENST00000496189 LINS1Q8NG48 757 aa20.81■□□□□ 0.92
SF3A1-209ENST00000496189 NEURL1BA8MQ27 555 aa20.8■□□□□ 0.92
SF3A1-209ENST00000496189 PDE8AO60658 829 aa20.8■□□□□ 0.92
SF3A1-209ENST00000496189 TMC4Q7Z404 712 aa20.8■□□□□ 0.92
SF3A1-209ENST00000496189 ZNF526Q8TF50 670 aaPredicted RBP20.8■□□□□ 0.92
SF3A1-209ENST00000496189 C7orf43Q8WVR3 580 aa20.8■□□□□ 0.92
SF3A1-209ENST00000496189 ABCC4O15439 1325 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 IGKV5-2P06315 115 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 FKBP4Q02790 459 aaKnown RBP eCLIP20.79■□□□□ 0.92
SF3A1-209ENST00000496189 GRAPQ13588 217 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 SF3B3Q15393 1217 aaKnown RBP20.79■□□□□ 0.92
SF3A1-209ENST00000496189 CWF19L2Q2TBE0 894 aaKnown RBP20.79■□□□□ 0.92
SF3A1-209ENST00000496189 ALDH1L2Q3SY69 923 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 CCDC152Q4G0S7 254 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 GRAPLQ8TC17 118 aaPredicted RBP20.79■□□□□ 0.92
SF3A1-209ENST00000496189 LAMB2P55268 1798 aa20.79■□□□□ 0.92
SF3A1-209ENST00000496189 CDHR2Q9BYE9 1310 aa20.78■□□□□ 0.92
SF3A1-209ENST00000496189 FER1L6Q2WGJ9 1857 aa20.78■□□□□ 0.92
SF3A1-209ENST00000496189 SMC4Q9NTJ3 1288 aa20.78■□□□□ 0.92
SF3A1-209ENST00000496189 DDX60Q8IY21 1712 aaKnown RBP20.78■□□□□ 0.92
SF3A1-209ENST00000496189 PTPRCP08575 1304 aa20.78■□□□□ 0.92
SF3A1-209ENST00000496189 KDM2BQ8NHM5 1336 aa20.78■□□□□ 0.92
SF3A1-209ENST00000496189 SBF1O95248 1867 aa20.77■□□□□ 0.92
SF3A1-209ENST00000496189 GCKRQ14397 625 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms