RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, human

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NELFE-213	ENST00000494956	C7orf43	Q8WVR3	580 aa		13.82	□□□□□ -0.2
NELFE-213	ENST00000494956	RRAGC	Q9HB90	399 aa		13.82	□□□□□ -0.2
NELFE-213	ENST00000494956	C8orf58	Q8NAV2	365 aa		13.81	□□□□□ -0.2
NELFE-213	ENST00000494956	TSR2	Q969E8	191 aa	Known RBP	13.81	□□□□□ -0.2
NELFE-213	ENST00000494956	NYX	Q9GZU5	481 aa		13.81	□□□□□ -0.2
NELFE-213	ENST00000494956	IFT57	Q9NWB7	429 aa		13.81	□□□□□ -0.2
NELFE-213	ENST00000494956	SALL2	Q9Y467	1007 aa	Predicted RBP	13.81	□□□□□ -0.2
NELFE-213	ENST00000494956	TAF1	P21675	1872 aa		13.8	□□□□□ -0.2
NELFE-213	ENST00000494956	GNAI1	P63096	354 aa		13.8	□□□□□ -0.2
NELFE-213	ENST00000494956	TSPYL6	Q8N831	410 aa		13.8	□□□□□ -0.2
NELFE-213	ENST00000494956	TAOK3	Q9H2K8	898 aa		13.8	□□□□□ -0.2
NELFE-213	ENST00000494956	PHAX	Q9H814	394 aa	Known RBP	13.8	□□□□□ -0.2
NELFE-213	ENST00000494956	TCERG1	O14776	1098 aa	Known RBP	13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	CRY2	Q49AN0	593 aa		13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	PPP1R42	Q7Z4L9	355 aa		13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	NLRP10	Q86W26	655 aa		13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	UTP14A	Q9BVJ6	771 aa	Known RBP	13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.79	□□□□□ -0.2
NELFE-213	ENST00000494956	ATP5J2-PTCD1	G3V325	749 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	HOXB7	P09629	217 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	HCLS1	P14317	486 aa	Predicted RBP	13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	TCIRG1	Q13488	830 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	PARP10	Q53GL7	1025 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	CCDC93	Q567U6	631 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	DBF4	Q9UBU7	674 aa	Predicted RBP	13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	KDM2B	Q8NHM5	1336 aa		13.78	□□□□□ -0.2
NELFE-213	ENST00000494956	GLTPD2	A6NH11	291 aa		13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	ANKRD13D	Q6ZTN6	518 aa		13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	WWC1	Q8IX03	1113 aa		13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	DDX60	Q8IY21	1712 aa	Known RBP	13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	PLBD2	Q8NHP8	589 aa		13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	RPGR	Q92834	1020 aa	Known RBP	13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	LTBP3	Q9NS15	1303 aa		13.77	□□□□□ -0.21
NELFE-213	ENST00000494956	RIC1	Q4ADV7	1423 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	SNED1	Q8TER0	1413 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	POTEC	B2RU33	542 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	TOMM70	O94826	608 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	ALDH1B1	P30837	517 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	CALD1	Q05682	793 aa	Known RBP	13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	RTL5	Q5HYW3	569 aa	Predicted RBP	13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	FAM9B	Q8IZU0	186 aa		13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	TRMT112	Q9UI30	125 aa	Known RBP	13.76	□□□□□ -0.21
NELFE-213	ENST00000494956	COL4A1	P02462	1669 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	DDN	O94850	711 aa	Predicted RBP	13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	HSPA6	P17066	643 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	HSP90AB3P	Q58FF7	597 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	SOGA3	Q5TF21	947 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	NLRP3	Q96P20	1036 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	ISCA1	Q9BUE6	129 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	HYPK	Q9NX55	129 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	COL4A5	P29400	1685 aa		13.75	□□□□□ -0.21
NELFE-213	ENST00000494956	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	WDR90	Q96KV7	1748 aa		13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	HOXA10	P31260	410 aa	Predicted RBP	13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	SLC10A5	Q5PT55	438 aa		13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	JARID2	Q92833	1246 aa	Predicted RBP	13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	FAM89A	Q96GI7	184 aa		13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	RBM17	Q96I25	401 aa	Known RBP	13.74	□□□□□ -0.21
NELFE-213	ENST00000494956	ABCC4	O15439	1325 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	ZNF541	Q9H0D2	1346 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	PPEF1	O14829	653 aa	Predicted RBP	13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	HTRA3	P83110	453 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	CCDC27	Q2M243	656 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	RIC3	Q7Z5B4	369 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	CRAMP1	Q96RY5	1269 aa		13.73	□□□□□ -0.21
NELFE-213	ENST00000494956	SH3TC1	Q8TE82	1336 aa		13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	DPY19L2	Q6NUT2	758 aa		13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	RTKN2	Q8IZC4	609 aa		13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	RBM46	Q8TBY0	533 aa	Known RBP	13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	MYD88	Q99836	296 aa		13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.72	□□□□□ -0.21
NELFE-213	ENST00000494956	POTEI	P0CG38	1075 aa		13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	POTEJ	P0CG39	1038 aa		13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	VEGFA	P15692	232 aa	Predicted RBP	13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	IARS	P41252	1262 aa	Known RBP	13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	GOLGA2	Q08379	1002 aa		13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	G2E3	Q7L622	706 aa		13.71	□□□□□ -0.21
NELFE-213	ENST00000494956	FANCI	Q9NVI1	1328 aa		13.7	□□□□□ -0.22
NELFE-213	ENST00000494956	TWISTNB	Q3B726	338 aa	Predicted RBP	13.7	□□□□□ -0.22
NELFE-213	ENST00000494956	CCDC30	Q5VVM6	783 aa		13.7	□□□□□ -0.22
NELFE-213	ENST00000494956	RNF123	Q5XPI4	1314 aa		13.69	□□□□□ -0.22
NELFE-213	ENST00000494956	PSMD1	Q99460	953 aa		13.69	□□□□□ -0.22
NELFE-213	ENST00000494956	MAP3K2	Q9Y2U5	619 aa		13.69	□□□□□ -0.22
NELFE-213	ENST00000494956	ATP6V0A2	Q9Y487	856 aa		13.69	□□□□□ -0.22
NELFE-213	ENST00000494956	IRS4	O14654	1257 aa	Predicted RBP	13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	SLC4A2	P04920	1241 aa		13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	EXOSC9	Q06265	439 aa	Known RBP	13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	AOC3	Q16853	763 aa		13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	DDX46	Q7L014	1031 aa	Known RBP	13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	CELF1	Q92879	486 aa	Known RBP	13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	METTL22	Q9BUU2	404 aa	Predicted RBP	13.68	□□□□□ -0.22
NELFE-213	ENST00000494956	IL16	Q14005	1332 aa		13.67	□□□□□ -0.22
NELFE-213	ENST00000494956	PI4KAP2	A4QPH2	592 aa		13.67	□□□□□ -0.22
NELFE-213	ENST00000494956	FZD9	O00144	591 aa		13.67	□□□□□ -0.22
NELFE-213	ENST00000494956	TRIM28	Q13263	835 aa	Known RBP	13.67	□□□□□ -0.22
NELFE-213	ENST00000494956	GRAP	Q13588	217 aa		13.67	□□□□□ -0.22
NELFE-213	ENST00000494956	LARGE2	Q8N3Y3	721 aa		13.67	□□□□□ -0.22

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