RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 WDR33Q9C0J8 1336 aaKnown RBP13.48□□□□□ -0.25
CHMP3-209ENST00000494623 UBE3BQ7Z3V4 1068 aa13.48□□□□□ -0.25
CHMP3-209ENST00000494623 LRP10Q7Z4F1 713 aa13.48□□□□□ -0.25
CHMP3-209ENST00000494623 SYCE3A1L190 88 aa13.48□□□□□ -0.25
CHMP3-209ENST00000494623 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 NECTIN1Q15223 517 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 TPRNQ4KMQ1 711 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 SMC3Q9UQE7 1217 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.47□□□□□ -0.25
CHMP3-209ENST00000494623 RBM8AQ9Y5S9 174 aaKnown RBP13.47□□□□□ -0.25
CHMP3-209ENST00000494623 CCDC171Q6TFL3 1326 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 ADAMTS7Q9UKP4 1686 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 A0A087WZG4 1122 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 ESPNB1AK53 854 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 HIP1O00291 1037 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 LARGE1O95461 756 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 MBD3O95983 291 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 ZKSCAN1P17029 563 aaPredicted RBP13.47□□□□□ -0.25
CHMP3-209ENST00000494623 HSPA2P54652 639 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 CCDC173Q0VFZ6 552 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 CYP46A1Q9Y6A2 500 aa13.47□□□□□ -0.25
CHMP3-209ENST00000494623 GADD45BO75293 160 aaPredicted RBP13.46□□□□□ -0.25
CHMP3-209ENST00000494623 CREB3L3Q68CJ9 461 aa13.46□□□□□ -0.25
CHMP3-209ENST00000494623 USP48Q86UV5 1035 aa13.46□□□□□ -0.25
CHMP3-209ENST00000494623 CCDC83Q8IWF9 413 aa13.46□□□□□ -0.25
CHMP3-209ENST00000494623 EDC3Q96F86 508 aaKnown RBP13.46□□□□□ -0.25
CHMP3-209ENST00000494623 ZSWIM6Q9HCJ5 1215 aa13.46□□□□□ -0.25
CHMP3-209ENST00000494623 SCN11AQ9UI33 1791 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 A0A0D9SFI3 127 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 TFCP2Q12800 502 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 LMTK3Q96Q04 1460 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 C5P01031 1676 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 TNS3Q68CZ2 1445 aa13.46□□□□□ -0.26
CHMP3-209ENST00000494623 ERBB4Q15303 1308 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 SYT1P21579 422 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 PTPN12Q05209 780 aaKnown RBP13.45□□□□□ -0.26
CHMP3-209ENST00000494623 VPS53Q5VIR6 699 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 MAP4K1Q92918 833 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 COPRSQ9NQ92 184 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 RPAP1Q9BWH6 1393 aaPredicted RBP13.45□□□□□ -0.26
CHMP3-209ENST00000494623 CLCN1P35523 988 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 RFX5P48382 616 aaPredicted RBP13.45□□□□□ -0.26
CHMP3-209ENST00000494623 LRSAM1Q6UWE0 723 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 TOM1L2Q6ZVM7 507 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 PPP1R9BQ96SB3 815 aa13.45□□□□□ -0.26
CHMP3-209ENST00000494623 STX6O43752 255 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 ZSCAN22P10073 491 aaPredicted RBP13.44□□□□□ -0.26
CHMP3-209ENST00000494623 KCNB2Q92953 911 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 TM6SF1Q9BZW5 370 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 CHMP3Q9Y3E7 222 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 CCDC9Q9Y3X0 531 aaKnown RBP13.44□□□□□ -0.26
CHMP3-209ENST00000494623 NDUFB9Q9Y6M9 179 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 TNNI3KQ59H18 835 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 PLBD2Q8NHP8 589 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 PRDM11Q9NQV5 511 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 FPGT-TNNI3KV9GXZ4 949 aa13.44□□□□□ -0.26
CHMP3-209ENST00000494623 COL18A1P39060 1754 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 SLC27A2O14975 620 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 GJB2P29033 226 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 NECAB1Q8N987 351 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 ZCRB1Q8TBF4 217 aaKnown RBP13.43□□□□□ -0.26
CHMP3-209ENST00000494623 DBNLQ9UJU6 430 aaKnown RBP13.43□□□□□ -0.26
CHMP3-209ENST00000494623 CNPY2Q9Y2B0 182 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 CRYBG1Q9Y4K1 1723 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 NBPF26B4DH59 902 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 NBPF14Q5TI25 921 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 NBPF10Q6P3W6 841 aaKnown RBP13.43□□□□□ -0.26
CHMP3-209ENST00000494623 LMBR1LQ6UX01 489 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 NBPF15Q8N660 670 aa13.43□□□□□ -0.26
CHMP3-209ENST00000494623 ZSCAN31Q96LW9 406 aaPredicted RBP13.43□□□□□ -0.26
CHMP3-209ENST00000494623 COL9A3Q14050 684 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-209ENST00000494623 ME3Q16798 604 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 ZNF589Q86UQ0 364 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-209ENST00000494623 TCEANC2Q96MN5 208 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 DCCP43146 1447 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 A1BGP04217 495 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 RABL6Q3YEC7 729 aaPredicted RBP13.42□□□□□ -0.26
CHMP3-209ENST00000494623 TTLL7Q6ZT98 887 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 BRINP3Q76B58 766 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 RNF214Q8ND24 703 aa13.42□□□□□ -0.26
CHMP3-209ENST00000494623 DNAJC2Q99543 621 aaKnown RBP13.42□□□□□ -0.26
CHMP3-209ENST00000494623 ATP5JP18859 108 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 PSMA5P28066 241 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 DBNDD2Q9BQY9 259 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 TPCN1Q9ULQ1 816 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 TAF6LQ9Y6J9 622 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 STRCP1A6NGW2 1772 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 RNF20Q5VTR2 975 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 SYAP1Q96A49 352 aaPredicted RBP13.41□□□□□ -0.26
CHMP3-209ENST00000494623 SH2B1Q9NRF2 756 aaPredicted RBP13.41□□□□□ -0.26
CHMP3-209ENST00000494623 CPDO75976 1380 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 F13A1P00488 732 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 CHGBP05060 677 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 CASP7P55210 303 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 SNRKQ9NRH2 765 aa13.41□□□□□ -0.26
CHMP3-209ENST00000494623 BLOC1S2Q6QNY1 142 aa13.4□□□□□ -0.26
CHMP3-209ENST00000494623 NEUROD6Q96NK8 337 aa13.4□□□□□ -0.26
CHMP3-209ENST00000494623 ST3GAL1Q11201 340 aa13.4□□□□□ -0.27
CHMP3-209ENST00000494623 ZBTB3Q9H5J0 574 aa13.4□□□□□ -0.27
CHMP3-209ENST00000494623 STRN4Q9NRL3 753 aa13.4□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms