RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 ATP6V1AP38606 617 aa8.9□□□□□ -0.98
SMARCE1-211ENST00000493660 IL6STP40189 918 aaPredicted RBP8.9□□□□□ -0.98
SMARCE1-211ENST00000493660 AIMP1Q12904 312 aaKnown RBP8.9□□□□□ -0.98
SMARCE1-211ENST00000493660 MEIS3Q99687 375 aa8.9□□□□□ -0.98
SMARCE1-211ENST00000493660 UTYO14607 1347 aa8.9□□□□□ -0.98
SMARCE1-211ENST00000493660 TNS1Q9HBL0 1735 aaKnown RBP8.9□□□□□ -0.99
SMARCE1-211ENST00000493660 SCN7AQ01118 1682 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 IGHDP01880 384 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 ANKRD44Q8N8A2 993 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 GTPBP4Q9BZE4 634 aaKnown RBP8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 CCDC87Q9NVE4 849 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 CNTNAP4Q9C0A0 1308 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 COL15A1P39059 1388 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 C4BP0C0L5 1744 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 ESPNB1AK53 854 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 LETM1O95202 739 aaPredicted RBP8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 KIF6Q6ZMV9 814 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 USP44Q9H0E7 712 aa8.89□□□□□ -0.99
SMARCE1-211ENST00000493660 RGL2O15211 777 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 UBTFL1P0CB47 393 aaPredicted RBP8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 IRX3P78415 501 aaPredicted RBP8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 RC3H1Q5TC82 1133 aaKnown RBP8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 NEURL1BA8MQ27 555 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 HMMRO75330 724 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 ITPK1Q13572 414 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 CEP85Q6P2H3 762 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 INTS5Q6P9B9 1019 aaKnown RBP8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 SMC5Q8IY18 1101 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 PLCD3Q8N3E9 789 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 RGS22Q8NE09 1264 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 GCC1Q96CN9 775 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 ZBTB1Q9Y2K1 713 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 MAP3K15Q6ZN16 1313 aa8.88□□□□□ -0.99
SMARCE1-211ENST00000493660 ERVV-1B6SEH8 477 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 IGKV5-2P06315 115 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 CRKLP46109 303 aaKnown RBP8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 PIP4K2AP48426 406 aaPredicted RBP8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 EIF5P55010 431 aaKnown RBP8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 HSP90AB3PQ58FF7 597 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 TTLL7Q6ZT98 887 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 MYD88Q99836 296 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 C1orf115Q9H7X2 142 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 RGS17Q9UGC6 210 aaPredicted RBP8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 C4AP0C0L4 1744 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 LAMB2P55268 1798 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 A0A087WZG4 1122 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 GRM8O00222 908 aa8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 TRIM28Q13263 835 aaKnown RBP8.87□□□□□ -0.99
SMARCE1-211ENST00000493660 UBR3Q6ZT12 1888 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 MYH3P11055 1940 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 FSD2A1L4K1 749 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 GOLGA6L3A6NEY3 463 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 CDK11BP21127 795 aaKnown RBP8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 GCKRQ14397 625 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 FAM182BQ5T319 152 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 KIAA1211Q6ZU35 1233 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 SIRT2Q8IXJ6 389 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 CCDC191Q8NCU4 936 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 C9orf78Q9NZ63 289 aaPredicted RBP8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 FBXO3Q9UK99 471 aa8.86□□□□□ -0.99
SMARCE1-211ENST00000493660 ATP8B2P98198 1209 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 TCIRG1Q13488 830 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 MTX1Q13505 466 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 CWF19L2Q2TBE0 894 aaKnown RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 SLC27A3Q5K4L6 730 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 GIGYF2Q6Y7W6 1299 aaKnown RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 LINC00116Q8NCU8 138 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 ISCA1Q9BUE6 129 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 CCNL1Q9UK58 526 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 LRRFIP2Q9Y608 721 aaKnown RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 XRCC6P12956 609 aaKnown RBP eCLIP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 POTEAQ6S8J7 498 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 PPP4R3CPQ6ZMV5 832 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 PTF1AQ7RTS3 328 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 TRIM44Q96DX7 344 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 CWC25Q9NXE8 425 aaPredicted RBP8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 COL24A1Q17RW2 1714 aa8.85□□□□□ -0.99
SMARCE1-211ENST00000493660 NBPF7P0C2Y1 421 aaPredicted RBP8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 MMP14P50281 582 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 DZIP3Q86Y13 1208 aaKnown RBP8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 ZBTB3Q9H5J0 574 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 DCTPP1Q9H773 170 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 RPS6KA4O75676 772 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 SLC20A2Q08357 652 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 POLA2Q14181 598 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 SSH3Q8TE77 659 aa8.84□□□□□ -0.99
SMARCE1-211ENST00000493660 VGLL3A8MV65 326 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 H7C1W4 665 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 CLGNO14967 610 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 PLSCR1O15162 318 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 ZSCAN20P17040 1043 aaPredicted RBP8.83□□□□□ -1
SMARCE1-211ENST00000493660 NUCB1Q02818 461 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 PDZRN3Q9UPQ7 1066 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 ZNF330Q9Y3S2 320 aaPredicted RBP8.83□□□□□ -1
SMARCE1-211ENST00000493660 QSER1Q2KHR3 1735 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 TRIM37O94972 964 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 CASP7P55210 303 aa8.83□□□□□ -1
SMARCE1-211ENST00000493660 ISY1Q9ULR0 285 aaKnown RBP8.83□□□□□ -1
SMARCE1-211ENST00000493660 ZNF652Q9Y2D9 606 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 978.5 ms