RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 EIF4A1P60842 406 aaKnown RBP14.03□□□□□ -0.16
COL6A3-214ENST00000493608 PNISRQ8TF01 805 aaKnown RBP14.03□□□□□ -0.16
COL6A3-214ENST00000493608 PIM2Q9P1W9 311 aa14.03□□□□□ -0.16
COL6A3-214ENST00000493608 PCDH10Q9P2E7 1040 aa14.03□□□□□ -0.16
COL6A3-214ENST00000493608 KDM3BQ7LBC6 1761 aa14.03□□□□□ -0.16
COL6A3-214ENST00000493608 SNPHO15079 494 aa14.02□□□□□ -0.17
COL6A3-214ENST00000493608 GIGYF1O75420 1035 aaPredicted RBP14.02□□□□□ -0.17
COL6A3-214ENST00000493608 RUNDC1Q96C34 613 aa14.02□□□□□ -0.17
COL6A3-214ENST00000493608 TSPYL4Q9UJ04 414 aa14.02□□□□□ -0.17
COL6A3-214ENST00000493608 NRXN2Q9P2S2 1712 aa14.01□□□□□ -0.17
COL6A3-214ENST00000493608 CARMIL3Q8ND23 1372 aa14.01□□□□□ -0.17
COL6A3-214ENST00000493608 ZNF526Q8TF50 670 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-214ENST00000493608 SETDB2Q96T68 719 aa14.01□□□□□ -0.17
COL6A3-214ENST00000493608 SCN7AQ01118 1682 aa14.01□□□□□ -0.17
COL6A3-214ENST00000493608 MYL6BP14649 208 aa14□□□□□ -0.17
COL6A3-214ENST00000493608 DALRD3Q5D0E6 543 aaKnown RBP14□□□□□ -0.17
COL6A3-214ENST00000493608 C2CD5Q86YS7 1000 aa14□□□□□ -0.17
COL6A3-214ENST00000493608 LAS1LQ9Y4W2 734 aaKnown RBP14□□□□□ -0.17
COL6A3-214ENST00000493608 ARFGEF1Q9Y6D6 1849 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 BCORQ6W2J9 1755 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 ZNF316A6NFI3 1004 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-214ENST00000493608 HLFQ16534 295 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 PRR5LQ6MZQ0 368 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 ANKRD31Q8N7Z5 1873 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 LAMB4A4D0S4 1761 aa13.99□□□□□ -0.17
COL6A3-214ENST00000493608 ATP10DQ9P241 1426 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 FAM177BA6PVY3 158 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 G3V3G9 751 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 NPHP1O15259 732 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 EIF2S2P20042 333 aaKnown RBP13.98□□□□□ -0.17
COL6A3-214ENST00000493608 LMOD3Q0VAK6 560 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 CCDC184Q52MB2 194 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 FBXO22Q8NEZ5 403 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 STK24Q9Y6E0 443 aa13.98□□□□□ -0.17
COL6A3-214ENST00000493608 SENP3-EIF4A1A0A087X0R7 540 aa13.97□□□□□ -0.17
COL6A3-214ENST00000493608 H0YIN7 160 aa13.97□□□□□ -0.17
COL6A3-214ENST00000493608 MICALL2Q8IY33 904 aa13.97□□□□□ -0.17
COL6A3-214ENST00000493608 NECTIN2Q92692 538 aa13.97□□□□□ -0.17
COL6A3-214ENST00000493608 ZNF622Q969S3 477 aaKnown RBP eCLIP13.97□□□□□ -0.17
COL6A3-214ENST00000493608 NIP7Q9Y221 180 aaKnown RBP eCLIP13.97□□□□□ -0.17
COL6A3-214ENST00000493608 KRT24Q2M2I5 525 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 CLEC4GQ6UXB4 293 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 TTLL7Q6ZT98 887 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 CNBD1Q8NA66 436 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 BRIP1Q9BX63 1249 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 ZNF652Q9Y2D9 606 aa13.96□□□□□ -0.17
COL6A3-214ENST00000493608 NUP98P52948 1817 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 STK25O00506 426 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 APAF1O14727 1248 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 ANXA1P04083 346 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 NBPF5PQ86XG9 351 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-214ENST00000493608 TTLL6Q8N841 843 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 GPBP1L1Q9HC44 474 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-214ENST00000493608 SBF1O95248 1867 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 ADCY9O60503 1353 aa13.95□□□□□ -0.18
COL6A3-214ENST00000493608 DLEC1Q9Y238 1755 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 CHL1O00533 1208 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 PDE6BP35913 854 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 C1QTNF8P60827 252 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 ST5P78524 1137 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 RASSF7Q02833 373 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 CACNA1SQ13698 1873 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 CCDC88AQ3V6T2 1871 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 C9orf131Q5VYM1 1079 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 ZBTB3Q9H5J0 574 aa13.94□□□□□ -0.18
COL6A3-214ENST00000493608 PDIA6Q15084 440 aa13.93□□□□□ -0.18
COL6A3-214ENST00000493608 PROSER3Q2NL68 480 aa13.93□□□□□ -0.18
COL6A3-214ENST00000493608 KIF6Q6ZMV9 814 aa13.93□□□□□ -0.18
COL6A3-214ENST00000493608 MFRPQ9BY79 579 aa13.93□□□□□ -0.18
COL6A3-214ENST00000493608 BABAM1Q9NWV8 329 aa13.93□□□□□ -0.18
COL6A3-214ENST00000493608 COL11A2P13942 1736 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-214ENST00000493608 MAP3K15Q6ZN16 1313 aa13.92□□□□□ -0.18
COL6A3-214ENST00000493608 GPTP24298 496 aa13.92□□□□□ -0.18
COL6A3-214ENST00000493608 ERVV-1B6SEH8 477 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 C21orf2O43822 256 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 GTF2E1P29083 439 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-214ENST00000493608 AIMP1Q12904 312 aaKnown RBP13.91□□□□□ -0.18
COL6A3-214ENST00000493608 TMEM92Q6UXU6 159 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 TPTE2Q6XPS3 522 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 NUTM1Q86Y26 1132 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 PLSCR2Q9NRY7 297 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 RNF181Q9P0P0 153 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 SLX4Q8IY92 1834 aa13.91□□□□□ -0.18
COL6A3-214ENST00000493608 HOXB3P14651 431 aaPredicted RBP13.9□□□□□ -0.18
COL6A3-214ENST00000493608 PRELPP51888 382 aa13.9□□□□□ -0.18
COL6A3-214ENST00000493608 LRP10Q7Z4F1 713 aa13.9□□□□□ -0.18
COL6A3-214ENST00000493608 ERBB4Q15303 1308 aa13.9□□□□□ -0.19
COL6A3-214ENST00000493608 ANP32CO43423 234 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 SRGNP10124 158 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 COPS6Q7L5N1 327 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 MASTLQ96GX5 879 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 CFAP44Q96MT7 982 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 MBIPQ9NS73 344 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 PDZRN3Q9UPQ7 1066 aa13.89□□□□□ -0.19
COL6A3-214ENST00000493608 ERFEQ4G0M1 354 aa13.88□□□□□ -0.19
COL6A3-214ENST00000493608 SUSD4Q5VX71 490 aa13.88□□□□□ -0.19
COL6A3-214ENST00000493608 STYK1Q6J9G0 422 aa13.88□□□□□ -0.19
COL6A3-214ENST00000493608 GIGYF2Q6Y7W6 1299 aaKnown RBP13.88□□□□□ -0.19
COL6A3-214ENST00000493608 XAGE3Q8WTP9 111 aa13.88□□□□□ -0.19
COL6A3-214ENST00000493608 CNKSR1Q969H4 720 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms