RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 PRRT3Q5FWE3 981 aa7□□□□□ -1.29
PTCD3-218ENST00000493430 PRDM6Q9NQX0 595 aa7□□□□□ -1.29
PTCD3-218ENST00000493430 FAM196BA6NMK8 535 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 RTN1Q16799 776 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 ANKMY2Q8IV38 441 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 MICALL1Q8N3F8 863 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 BHMTQ93088 406 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 STARD13Q9Y3M8 1113 aa6.99□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L15C9J2P7 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L10C9JJH3 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L13C9JLJ4 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L12C9JPN9 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L11C9JVI0 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L21D6R901 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L18D6R9N7 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L22D6RA61 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L17D6RBQ6 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L19D6RCP7 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L20D6RJB6 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 IGFBP4P22692 258 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 USP17L24Q0WX57 530 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 IER5Q5VY09 327 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 EFCC1Q9HA90 598 aa6.98□□□□□ -1.29
PTCD3-218ENST00000493430 NISCHQ9Y2I1 1504 aa6.97□□□□□ -1.29
PTCD3-218ENST00000493430 LGR5O75473 907 aa6.97□□□□□ -1.29
PTCD3-218ENST00000493430 ALBP02768 609 aa6.97□□□□□ -1.29
PTCD3-218ENST00000493430 IGFLR1Q9H665 355 aa6.97□□□□□ -1.29
PTCD3-218ENST00000493430 TGFBR3LH3BV60 316 aa6.96□□□□□ -1.3
PTCD3-218ENST00000493430 APBA3O96018 575 aa6.96□□□□□ -1.3
PTCD3-218ENST00000493430 GATA4P43694 442 aa6.96□□□□□ -1.3
PTCD3-218ENST00000493430 TRIM28Q13263 835 aaKnown RBP6.96□□□□□ -1.3
PTCD3-218ENST00000493430 COL9A3Q14050 684 aaPredicted RBP6.96□□□□□ -1.3
PTCD3-218ENST00000493430 C8orf86Q6ZUL3 223 aa6.96□□□□□ -1.3
PTCD3-218ENST00000493430 UBE2OQ9C0C9 1292 aaKnown RBP6.96□□□□□ -1.3
PTCD3-218ENST00000493430 LILRB5O75023 590 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 TBC1D8BQ0IIM8 1120 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 CCINQ13939 588 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 C20orf204Q6ZNR8 217 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 PNMA5Q96PV4 448 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 GSX2Q9BZM3 304 aa6.95□□□□□ -1.3
PTCD3-218ENST00000493430 DMGDHQ9UI17 866 aaKnown RBP6.95□□□□□ -1.3
PTCD3-218ENST00000493430 NID1P14543 1247 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 EPB42P16452 691 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 DOC2BQ14184 412 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 FAM200AQ8TCP9 573 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 ARXQ96QS3 562 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 ZNF777Q9ULD5 760 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-218ENST00000493430 BCS1LQ9Y276 419 aa6.94□□□□□ -1.3
PTCD3-218ENST00000493430 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-218ENST00000493430 RFX1P22670 979 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 WEE1P30291 646 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 CFAP70Q5T0N1 1121 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 TRAPPC3LQ5T215 181 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 VTI1AQ96AJ9 217 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 NACC1Q96RE7 527 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.93□□□□□ -1.3
PTCD3-218ENST00000493430 KLK14Q9P0G3 267 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 SLC6A14Q9UN76 642 aa6.93□□□□□ -1.3
PTCD3-218ENST00000493430 FAM229AH3BQW9 127 aa6.92□□□□□ -1.3
PTCD3-218ENST00000493430 FOXO3O43524 673 aa6.92□□□□□ -1.3
PTCD3-218ENST00000493430 DNAJB12Q9NXW2 375 aaKnown RBP6.92□□□□□ -1.3
PTCD3-218ENST00000493430 NFKB1P19838 968 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 INPP5BP32019 993 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 IDH3AP50213 366 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 DGKZQ13574 1117 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 PCSK7Q16549 785 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 SEMA6BQ9H3T3 888 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 JPH1Q9HDC5 661 aaPredicted RBP6.91□□□□□ -1.3
PTCD3-218ENST00000493430 C11orf16Q9NQ32 467 aa6.91□□□□□ -1.3
PTCD3-218ENST00000493430 ARSDP51689 593 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 GRIK4Q16099 956 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 C11orf91Q3C1V1 193 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 CDCA8Q53HL2 280 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 PSAPL1Q6NUJ1 521 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 NUDT8Q8WV74 236 aa6.9□□□□□ -1.3
PTCD3-218ENST00000493430 QTRT2Q9H974 415 aaKnown RBP6.9□□□□□ -1.3
PTCD3-218ENST00000493430 RGS9O75916 674 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-218ENST00000493430 MICAL2O94851 1124 aa6.89□□□□□ -1.31
PTCD3-218ENST00000493430 MAP3K6O95382 1288 aa6.89□□□□□ -1.31
PTCD3-218ENST00000493430 RAC1P63000 192 aa6.89□□□□□ -1.31
PTCD3-218ENST00000493430 MYO19Q96H55 970 aa6.89□□□□□ -1.31
PTCD3-218ENST00000493430 A0A0A0MRY4 1105 aa6.88□□□□□ -1.31
PTCD3-218ENST00000493430 C9orf172C9J069 976 aa6.88□□□□□ -1.31
PTCD3-218ENST00000493430 ELNP15502 786 aa6.88□□□□□ -1.31
PTCD3-218ENST00000493430 GRNP28799 593 aaKnown RBP6.88□□□□□ -1.31
PTCD3-218ENST00000493430 AFF1P51825 1210 aaKnown RBP6.88□□□□□ -1.31
PTCD3-218ENST00000493430 FAM35AQ86V20 835 aa6.88□□□□□ -1.31
PTCD3-218ENST00000493430 NOVA2Q9UNW9 492 aaKnown RBP6.88□□□□□ -1.31
PTCD3-218ENST00000493430 XP32Q5T750 250 aa6.87□□□□□ -1.31
PTCD3-218ENST00000493430 KRT25Q7Z3Z0 450 aa6.87□□□□□ -1.31
PTCD3-218ENST00000493430 IFT43Q96FT9 208 aa6.87□□□□□ -1.31
PTCD3-218ENST00000493430 NAGPAQ9UK23 515 aa6.87□□□□□ -1.31
PTCD3-218ENST00000493430 SASH3O75995 380 aa6.86□□□□□ -1.31
PTCD3-218ENST00000493430 RARAP10276 462 aa6.86□□□□□ -1.31
PTCD3-218ENST00000493430 CPB1P15086 417 aa6.86□□□□□ -1.31
PTCD3-218ENST00000493430 TARSP26639 723 aaKnown RBP6.86□□□□□ -1.31
PTCD3-218ENST00000493430 ARID4AP29374 1257 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-218ENST00000493430 SWI5Q1ZZU3 235 aa6.86□□□□□ -1.31
PTCD3-218ENST00000493430 RSPO4Q2I0M5 234 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-218ENST00000493430 DHX32Q7L7V1 743 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms