RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 DDX21Q9NR30 783 aaKnown RBP eCLIP10.98□□□□□ -0.65
SMARCB1-207ENST00000491967 ZNF219Q9P2Y4 722 aaPredicted RBP10.98□□□□□ -0.65
SMARCB1-207ENST00000491967 RNF123Q5XPI4 1314 aa10.98□□□□□ -0.65
SMARCB1-207ENST00000491967 FAM177BA6PVY3 158 aa10.97□□□□□ -0.65
SMARCB1-207ENST00000491967 FZD9O00144 591 aa10.97□□□□□ -0.65
SMARCB1-207ENST00000491967 EIF2S2P20042 333 aaKnown RBP10.97□□□□□ -0.65
SMARCB1-207ENST00000491967 KRT24Q2M2I5 525 aa10.97□□□□□ -0.65
SMARCB1-207ENST00000491967 COPS6Q7L5N1 327 aa10.97□□□□□ -0.65
SMARCB1-207ENST00000491967 DDNO94850 711 aaPredicted RBP10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 GPTP24298 496 aa10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 GTF2E1P29083 439 aaPredicted RBP10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 TCIRG1Q13488 830 aa10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 WDR43Q15061 677 aaKnown RBP eCLIP10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 C3orf67Q6ZVT6 689 aa10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 PPP1R42Q7Z4L9 355 aa10.96□□□□□ -0.65
SMARCB1-207ENST00000491967 LAMB2P55268 1798 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 ANXA1P04083 346 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 IARSP41252 1262 aaKnown RBP10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 NEUROD2Q15784 382 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 HSP90AB3PQ58FF7 597 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 NLRP10Q86W26 655 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 SYNE4Q8N205 404 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 XAGE3Q8WTP9 111 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 KLRG1Q96E93 195 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 UTP14AQ9BVJ6 771 aaKnown RBP10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 ZNF277Q9NRM2 450 aaPredicted RBP10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 ADAMTSL1Q8N6G6 1762 aa10.95□□□□□ -0.66
SMARCB1-207ENST00000491967 PLBD2Q8NHP8 589 aa10.94□□□□□ -0.66
SMARCB1-207ENST00000491967 NLRP3Q96P20 1036 aa10.94□□□□□ -0.66
SMARCB1-207ENST00000491967 MBIPQ9NS73 344 aa10.94□□□□□ -0.66
SMARCB1-207ENST00000491967 DBF4Q9UBU7 674 aaPredicted RBP10.94□□□□□ -0.66
SMARCB1-207ENST00000491967 COL4A5P29400 1685 aa10.94□□□□□ -0.66
SMARCB1-207ENST00000491967 ZNF541Q9H0D2 1346 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 IQCA1LA6NCM1 817 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 APAF1O14727 1248 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 HTRA3P83110 453 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 TRIM28Q13263 835 aaKnown RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 NCBP3Q53F19 620 aaKnown RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 DUSP27Q5VZP5 1158 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 CHADLQ6NUI6 762 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 RPGRQ92834 1020 aaKnown RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 RBM17Q96I25 401 aaKnown RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 ISCA1Q9BUE6 129 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 RTFDC1Q9BY42 306 aaPredicted RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 VPS33BQ9H267 617 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 TAF1DQ9H5J8 278 aaPredicted RBP10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 IFT57Q9NWB7 429 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 CHPF2Q9P2E5 772 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 ATP6V0A2Q9Y487 856 aa10.93□□□□□ -0.66
SMARCB1-207ENST00000491967 BBOX1O75936 387 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 POTEIP0CG38 1075 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 POTEJP0CG39 1038 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 HDGFL1Q5TGJ6 251 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 ANKRD13DQ6ZTN6 518 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 GPC2Q8N158 579 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 HYPKQ9NX55 129 aa10.92□□□□□ -0.66
SMARCB1-207ENST00000491967 PASKQ96RG2 1323 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 PPEF1O14829 653 aaPredicted RBP10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 ITGBL1O95965 494 aaPredicted RBP10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 CALD1Q05682 793 aaKnown RBP10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 SLC51AQ86UW1 340 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 LDHDQ86WU2 507 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 SP8Q8IXZ3 490 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 NECTIN2Q92692 538 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 DDX60Q8IY21 1712 aaKnown RBP10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 TAF1P21675 1872 aa10.91□□□□□ -0.66
SMARCB1-207ENST00000491967 ABCC4O15439 1325 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 SH3TC1Q8TE82 1336 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 GNAI1P63096 354 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 AIMP1Q12904 312 aaKnown RBP10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 SF3B3Q15393 1217 aaKnown RBP10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 CCDC27Q2M243 656 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 CCDC184Q52MB2 194 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 JDP2Q8WYK2 163 aa10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 TRMT112Q9UI30 125 aaKnown RBP10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 LAS1LQ9Y4W2 734 aaKnown RBP10.9□□□□□ -0.66
SMARCB1-207ENST00000491967 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 LTBP1Q14766 1721 aa10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 PCNTO95613 3336 aa10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 HCLS1P14317 486 aaPredicted RBP10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 CREBZFQ9NS37 354 aa10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 HACL1Q9UJ83 578 aa10.89□□□□□ -0.67
SMARCB1-207ENST00000491967 EPHX2P34913 555 aa10.88□□□□□ -0.67
SMARCB1-207ENST00000491967 TMC4Q7Z404 712 aa10.88□□□□□ -0.67
SMARCB1-207ENST00000491967 PNMA8AQ86V59 439 aaPredicted RBP10.88□□□□□ -0.67
SMARCB1-207ENST00000491967 C8orf58Q8NAV2 365 aa10.88□□□□□ -0.67
SMARCB1-207ENST00000491967 SCNN1DP51172 638 aa10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 KIAA2012Q0VF49 1180 aa10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 GRAPQ13588 217 aa10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 LARGE2Q8N3Y3 721 aa10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 GRAPLQ8TC17 118 aaPredicted RBP10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 CHMP4AQ9BY43 222 aa10.87□□□□□ -0.67
SMARCB1-207ENST00000491967 CACNA1FO60840 1977 aa10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 DUOX1Q9NRD9 1551 aa10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 ZEB1P37275 1124 aaPredicted RBP10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 EIF6P56537 245 aaKnown RBP10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 DDX46Q7L014 1031 aaKnown RBP10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 WWC1Q8IX03 1113 aa10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 MPNDQ8N594 471 aa10.86□□□□□ -0.67
SMARCB1-207ENST00000491967 ZBTB38Q8NAP3 1195 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms